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Kültz,\ D.*\ ; Gardell,\ A.M.*\ ; DeTomaso,\ A.*\ ; Stoney,\ G.*\ ; Rinkevich,\ B.*\ ; Qarri,\ A.\ ; Hamar,\ J.*
"); document.write("
Proteome-wide 4-hydroxy-2-nonenal signature of oxidative stress in the marine invasive tunicate \Botryllus\ schlosseri.
"); document.write("
Proteomics 25, 12-25 (2025)
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Degroote,\ R.L.*\ ; Schmalen,\ A.*\ ; Renner,\ S.*\ ; Wolf,\ E.*\ ; Hauck,\ S.M.\ ; Deeg,\ C.A.*
"); document.write("
Diabetic retinopathy from the vitreous proteome perspective: The INS\C94Y\ transgenic pig model study.
"); document.write("
Proteomics, DOI: 10.1002/pmic.202300591:e2300591 (2024)
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Kültz,\ D.*\ ; Gardell,\ A.M.*\ ; DeTomaso,\ A.*\ ; Stoney,\ G.*\ ; Rinkevich,\ B.*\ ; Rinkevich,\ Y.\ ; Qarri,\ A.\ ; Dong,\ W.*\ ; Luu,\ B.*\ ; Lin,\ M.*
"); document.write("
Deep quantitative proteomics of North American Pacific coast star tunicate (\Botryllus schlosseri\).
"); document.write("
Proteomics:e2300628 (2024)
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"); document.write("
Sun,\ B.*\ ; Smialowski,\ P.\ ; Aftab,\ W.*\ ; Schmidt,\ A.*\ ; Forne,\ I.*\ ; Straub,\ T.*\ ; Imhof,\ A.*
"); document.write("
Improving SWATH-MS analysis by deep-learning.
"); document.write("
Proteomics 23:e2200179 (2023)
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"); document.write("
"); document.write("
Witting,\ M.
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(Re-)use and (re-)analysis of publicly available metabolomics data.
"); document.write("
Proteomics 23:e2300032 (2023)
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"); document.write("
"); document.write("
Ruzafa,\ N.*\ ; Pereiro,\ X.*\ ; Lepper,\ M.F.\ ; Hauck,\ S.M.\ ; Vecino,\ E.*
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A proteomics approach to identify candidate proteins secreted by M\üller glia that protect ganglion cells in the retina.
"); document.write("
Proteomics 11:e1700321 (2018)
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"); document.write("
"); document.write("
Hauck,\ S.M.\ ; Lepper,\ M.F.\ ; Hertl,\ M.*\ ; Sekundo,\ W.*\ ; Deeg,\ C.A.*
"); document.write("
Proteome dynamics in biobanked horse peripheral blood derived lymphocytes (PBL) with induced autoimmune uveitis.
"); document.write("
Proteomics 17:1700013 (2017)
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"); document.write("
"); document.write("
Mossina,\ A.\ ; Lukas,\ C.\ ; Merl-Pham,\ J.\ ; Uhl,\ F.E.*\ ; Mutze,\ K.\ ; Schamberger,\ A.C.\ ; Staab-Weijnitz,\ C.A.\ ; Jia,\ J.\ ; Yildirim,\ A.Ö.\ ; Königshoff,\ M.\ ; Hauck,\ S.M.\ ; Eickelberg,\ O.\ ; Meiners,\ S.
"); document.write("
Cigarette smoke alters the secretome of lung epithelial cells.
"); document.write("
Proteomics 17:1600243 (2017)
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"); document.write("
Lahiri,\ S.*\ ; Sun,\ N.\ ; Solis-Mezarino,\ V.*\ ; Fedisch,\ A.*\ ; Ninkovic,\ J.\ ; Feuchtinger,\ A.\ ; Götz,\ M.\ ; Walch,\ A.K.\ ; Imhof,\ A.*
"); document.write("
\In situ\ detection of histone variants and modifications in mouse brain using imaging mass spectrometry.
"); document.write("
Proteomics 16, 437-447 (2016)
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"); document.write("
"); document.write("
Mai,\ H.J.*\ ; Lindermayr,\ C.\ ; von Toerne,\ C.\ ; Fink-Straube,\ C.*\ ; Durner,\ J.\ ; Bauer,\ P.*
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Iron and FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT)-dependent regulation of proteins and genes in \Arabidopsis thaliana\ roots.
"); document.write("
Proteomics 15, 3030-3047 (2015)
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"); document.write("
Porras,\ P.*\ ; Duesbury,\ M.*\ ; Fabregat,\ A.*\ ; Ueffing,\ M.\ ; Orchard,\ S.*\ ; Gloeckner,\ C.J.\ ; Hermjakob,\ H.*
"); document.write("
A visual review of the interactome of LRRK2: Using deep-curated molecular interaction data to represent biology.
"); document.write("
Proteomics 15, 1390-1404 (2015)
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"); document.write("
Maier,\ S.K.\ ; Bashkueva,\ K.*\ ; Rösli,\ C.*\ ; Skerra,\ A.*\ ; Kuster,\ B.*
"); document.write("
PAS-cal: A repetitive peptide sequence calibration standard for MALDI mass spectrometry.
"); document.write("
Proteomics 14, 2427-2431 (2014)
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Sun,\ N.\ ; Ly,\ A.\ ; Meding,\ S.\ ; Witting,\ M.\ ; Hauck,\ S.M.\ ; Ueffing,\ M.\ ; Schmitt-Kopplin,\ P.\ ; Aichler,\ M.\ ; Walch,\ A.K.
"); document.write("
High-resolution metabolite imaging of light and dark treated retina using MALDI-FTICR mass spectrometry.
"); document.write("
Proteomics 14, 913-923 (2014)
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"); document.write("
"); document.write("
Zahedi,\ R.P.*\ ; Ueffing,\ M.\ ; Sickmann,\ A.*
"); document.write("
Proteomics - moving from inventory to personalized medicine?
"); document.write("
Proteomics 14, 1953 (2014)
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Yentrapalli,\ R.\ ; Azimzadeh,\ O.\ ; Barjaktarovic,\ Z.\ ; Sarioglu,\ H.\ ; Wojcik,\ A.*\ ; Harms-Ringdahl,\ M.*\ ; Atkinson,\ M.J.\ ; Haghdoost,\ S.*\ ; Tapio,\ S.
"); document.write("
Quantitative proteomic analysis reveals induction of premature senescence in human umbilical vein endothelial cells exposed to chronic low-dose rate gamma radiation.
"); document.write("
Proteomics 13, 1096-1107 (2013)
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"); document.write("
Braun,\ P.
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Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays.
"); document.write("
Proteomics 12, 1499-1518 (2012)
"); document.write("
"); document.write("
"); document.write("
Braun,\ P.\ ; Gingras,\ A.C.*
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History of protein-protein interactions: From egg-white to complex networks.
"); document.write("
Proteomics 12, 1478-1498 (2012)
"); document.write("
"); document.write("
"); document.write("
Dong,\ G.F.*\ ; Callegari,\ E.*\ ; Gloeckner,\ C.J.\ ; Ueffing,\ M.\ ; Wang,\ H.M.*
"); document.write("
Mass spectrometric identification of novel posttranslational modification sites in huntingtin.
"); document.write("
Proteomics 12, 2060-2064 (2012)
"); document.write("
"); document.write("
"); document.write("
Merl,\ J.\ ; Ueffing,\ M.\ ; Hauck,\ S.M.\ ; von Toerne,\ C.
"); document.write("
Direct comparison of MS-based label-free and SILAC quantitative proteome profiling strategies in primary retinal M\üller cells.
"); document.write("
Proteomics 12, 1902-1911 (2012)
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"); document.write("
Azimzadeh,\ O.\ ; Scherthan,\ H.*\ ; Sarioglu,\ H.\ ; Barjaktarovic,\ Z.\ ; Conrad,\ M.\ ; Vogt,\ A.*\ ; Calzada-Wack,\ J.\ ; Neff,\ F.\ ; Aubele,\ M.\ ; Buske,\ C.\ ; Atkinson,\ M.J.\ ; Tapio,\ S.
"); document.write("
Rapid proteomic remodeling of cardiac tissue caused by total body ionizing radiation.
"); document.write("
Proteomics 11, 3299-3311 (2011)
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"); document.write("
"); document.write("
Holzmeister,\ C.F.\ ; Fröhlich,\ A.\ ; Sarioglu,\ H.\ ; Bauer,\ N.\ ; Durner,\ J.\ ; Lindermayr,\ C.
"); document.write("
Proteomic analysis of defense response of wildtype \Arabidopsis thalian\a and plants with impaired NO-homeostasis.
"); document.write("
Proteomics 11, 1664-1683 (2011)
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"); document.write("
Antonov,\ A.V.\ ; Dietmann,\ S.\ ; Rodchenkov,\ I.\ ; Mewes,\ H.-W.
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PPI spider: A tool for the interpretation of proteomics data in the context of protein-protein interaction networks.
"); document.write("
Proteomics 9, 2740-2749 (2009)
"); document.write("
"); document.write("
"); document.write("
Milosevic,\ J.*\ ; Bulau,\ P.*\ ; Mortz,\ E.*\ ; Eickelberg,\ O.
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Subcellular fractionation of TGF-\β1-stimulated lung epithelial cells: A novel proteomic approach for identifying signaling intermediates.
"); document.write("
Proteomics 9, 1230-1240 (2009)
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"); document.write("
Bode,\ M.*\ ; Irmler,\ M.\ ; Friedenberger,\ M.*\ ; May,\ C.*\ ; Jung,\ K.*\ ; Stephan,\ C.*\ ; Meyer,\ H.E.*\ ; Lach,\ C.\ ; Hillert,\ R.*\ ; Krusche,\ A.*\ ; Beckers,\ J.\ ; Marcus,\ K.*\ ; Schubert,\ W.*
"); document.write("
Interlocking transcriptomics, proteomics and toponomics technologies for brain tissue analysis in murine hippocampus.
"); document.write("
Proteomics 8, 1170-1178 (2008)
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"); document.write("
"); document.write("
Hamacher,\ M.*\ ; Herberg,\ F.*\ ; Ueffing,\ M.\ ; Meyer,\ H.E.
"); document.write("
Seven successful years of Omics research: The Human Brain Proteome Project within the National German Research Network (NGFN).
"); document.write("
Proteomics 8, 1116-1117 (2008)
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"); document.write("
"); document.write("
Hartl,\ D.*\ ; Irmler,\ M.\ ; Römer,\ I.*\ ; Mader,\ M.T.\ ; Mao,\ L.*\ ; Zabel,\ C.*\ ; Hrabě de Angelis,\ M.\ ; Beckers,\ J.\ ; Klose,\ J.*
"); document.write("
Transcriptome and proteome analysis of early embryonic mouse brain development.
"); document.write("
Proteomics 8, 1257-1265 (2008)
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"); document.write("
"); document.write("
Horsch,\ M.\ ; Schädler,\ S.\ ; Gailus-Durner,\ V.\ ; Fuchs,\ H.\ ; Meyer,\ H.*\ ; Hrabě de Angelis,\ M.\ ; Beckers,\ J.
"); document.write("
Systematic gene expression profiling of mouse model series reveals coexpressed genes.
"); document.write("
Proteomics 8, 1248-1256 (2008)
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"); document.write("
"); document.write("
Irmler,\ M.\ ; Hartl,\ D.*\ ; Schmidt,\ T.*\ ; Schuchhardt,\ J.*\ ; Lach,\ C.\ ; Meyer,\ H.E.*\ ; Hrabě de Angelis,\ M.\ ; Klose,\ J.*\ ; Beckers,\ J.
"); document.write("
An approach to handling and interpretation of ambiguous data in transcriptome and proteome comparisons.
"); document.write("
Proteomics 8, 1165-1169 (2008)
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"); document.write("
"); document.write("
Schuchhardt,\ J.*\ ; Glintschert,\ A.*\ ; Hartl,\ D.*\ ; Irmler,\ M.\ ; Beckers,\ J.\ ; Stephan,\ C.*\ ; Marcus,\ K.*\ ; Klose.,\ J.*\ ; Meyer,\ H.E.*\ ; Malik,\ A.*
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BrainProfileDB - a platform for integration of functional genomics data.
"); document.write("
Proteomics 8, 1162-1164 (2008)
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"); document.write("
"); document.write("
Deeg,\ C.A.*\ ; Altmann,\ F.*\ ; Hauck,\ S.M.\ ; Schoeffmann,\ S.\ ; Amann,\ B.*\ ; Stangassinger,\ M.*\ ; Ueffing,\ M.
"); document.write("
Down-regulation of pigment epithelium-derived factor in uveitic lesion associates with focal vascular endothelial growth factor expression and breakdown of the blood-retinal barrier.
"); document.write("
Proteomics 7, 1540-1548 (2007)
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"); document.write("
Gloeckner,\ C.J.\ ; Boldt,\ K.\ ; Schumacher,\ A.\ ; Roepman,\ R.*\ ; Ueffing,\ M.
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A novel tandem affinity purification strategy for the efficient isolation and characterisation of native protein complexes.
"); document.write("
Proteomics 7, 4228-4234 (2007)
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"); document.write("
"); document.write("
Hamacher,\ M.*\ ; Stephan,\ C.*\ ; Eisenacher,\ M.*\ ; Lewczuk,\ P.*\ ; Wiltfang,\ J.*\ ; Martens,\ L.*\ ; Vizcaíno,\ J.A.*\ ; Kwon,\ K.H.*\ ; Yoo,\ J.S.*\ ; Park,\ Y.M.*\ ; Beckers,\ J.\ ; Horsch,\ M.\ ; Hrabě de Angelis,\ M.\ ; Cho,\ Z.H.*\ ; Apweiler,\ R.*\ ; Meyer,\ H.E.*
"); document.write("
High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop.
"); document.write("
Proteomics 7, 2490-2496 (2007)
"); document.write("
"); document.write("
"); document.write("
Kiemer,\ L.*\ ; Costa,\ S.\ ; Ueffing,\ M.\ ; Cesareni,\ G.*
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WI-PHI: A weighted yeast interactome enriched for direct physical interactions.
"); document.write("
Proteomics 7, 932-943 (2007)
"); document.write("
"); document.write("
"); document.write("
Blazek,\ E.\ ; Meisterernst,\ M.
"); document.write("
A functional proteomics approach for the detection of nuclear proteins based on derepressed importin alpha.
"); document.write("
Proteomics 6, 2070-2078 (2006)
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"); document.write("
"); document.write("
Islinger,\ M.*\ ; Lüers,\ G.H.*\ ; Zischka,\ H.\ ; Ueffing,\ M.\ ; Völkl,\ A.*
"); document.write("
Insights into the membrane proteome of rat liver peroxisomes: Microsomal glutathione-S-transferase is shared by both subcellular compartments.
"); document.write("
Proteomics 6, 804-816 (2006)
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"); document.write("
"); document.write("
Sarioglu,\ H.\ ; Brandner,\ S.\ ; Jacobsen,\ C.\ ; Meindl,\ T.*\ ; Schmidt,\ A.*\ ; Kellermann,\ J.*\ ; Lottspeich,\ F.*\ ; Andrae,\ U.
"); document.write("
Quantitative analysis of 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced proteome alterations in 5L rat hepatoma cells using isotope-coded protein lables.
"); document.write("
Proteomics 6, 2407-2421 (2006)
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"); document.write("
"); document.write("
Schmitt,\ S.*\ ; Prokisch,\ H.\ ; Schlunck,\ T.*\ ; Camp II,\ D.G.*\ ; Ahting,\ U.\ ; Waizenegger,\ T.*\ ; Scharfe,\ C.*\ ; Meitinger,\ T.\ ; Imhof,\ A.*\ ; Neupert,\ W.*\ ; Oefner,\ P.J.*
"); document.write("
Proteome analysis of mitochondrial outer membrane from Neurospora crassa.
"); document.write("
Proteomics 6, 72-80 (2006)
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"); document.write("
"); document.write("
Facius,\ A.\ ; Englbrecht,\ C.C.\ ; Birzele,\ F.\ ; Groscurth,\ A.\ ; Benjamin,\ S.\ ; Wanka,\ S.\ ; Mewes,\ H.-W.
"); document.write("
PRIME: A graphical interface for integrating genomic/proteomic databases.
"); document.write("
Proteomics 5, 76-80 (2005)
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"); document.write("
"); document.write("
Hauck,\ S.M.\ ; Schoeffmann,\ S.\ ; Deeg,\ C.A.*\ ; Gloeckner,\ C.J.\ ; Swiatek-de Lange,\ M.\ ; Ueffing,\ M.
"); document.write("
Proteomic analysis of the porcine interphotoreceptor matrix.
"); document.write("
Proteomics 5, 3623-3636 (2005)
"); document.write("
"); document.write("
"); document.write("
Klein,\ C.*\ ; Garcia-Rizo,\ C.*\ ; Bisle,\ B.*\ ; Scheffer,\ B.*\ ; Zischka,\ H.\ ; Pfeiffer,\ F.*\ ; Siedler,\ F.*\ ; Oesterhelt,\ D.*
"); document.write("
The membrane proteome of Halobacterium salinarum.
"); document.write("
Proteomics 5, 180-197 (2005)
"); document.write("
"); document.write("
"); document.write("
Zischka,\ H.\ ; Gloeckner,\ C.J.\ ; Klein,\ C.*\ ; Willmann,\ S.\ ; Swiatek-de Lange,\ M.\ ; Ueffing,\ M.
"); document.write("
Improved mass spectrometric identification of gel-separated hydrophobic membrane proteins after sodium dodecyl sulfate removal by ion-pair extraction.
"); document.write("
Proteomics 4, 3776-3782 (2004)
"); document.write("
"); document.write("
"); document.write("
Zischka,\ H.\ ; Weber,\ G.*\ ; Weber,\ P.J.*\ ; Posch,\ A.*\ ; Braun,\ R.J.\ ; Bühringer,\ D.*\ ; Schneider,\ U.*\ ; Nissum,\ M.*\ ; Meitinger,\ T.\ ; Ueffing,\ M.\ ; Eckerskorn,\ C.*
"); document.write("
Improved proteome analysis of \Saccharomyces cerevisiae\ mitochondria by free-flow electrophoresis.
"); document.write("
Proteomics 3, 906-916 (2003)
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");