Ballnus, B. ; Hug, S. ; Hatz, K.* ; Görlitz, L.* ; Hasenauer, J. ; Theis, F.J.
Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems.
BMC Syst. Biol. 11:63 (2017)
Fiedler, A. ; Raeth, S.* ; Theis, F.J. ; Hausser, A.* ; Hasenauer, J.
Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints.
BMC Syst. Biol. 10:80 (2016)
Kavšček, M.* ; Bhutada, G.* ; Madl, T. ; Natter, K.*
Optimization of lipid production with a genome-scale model of Yarrowia lipolytica.
BMC Syst. Biol. 9:72 (2015)
Strasser, M. ; Feigelman, J. ; Theis, F.J. ; Marr, C.
Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy.
BMC Syst. Biol. 9:61 (2015)
Goebels, F.* ; Frishman, D.
Prediction of protein interaction types based on sequence and network features.
BMC Syst. Biol. 7:S5 (2013)
Hock, S. ; Ng, Y.K. ; Hasenauer, J. ; Wittmann, D.M.* ; Lutter, D. ; Trümbach, D. ; Wurst, W. ; Prakash, N. ; Theis, F.J.
Sharpening of expression domains induced by transcription and microRNA regulation within a spatio-temporal model of mid-hindbrain boundary formation.
BMC Syst. Biol. 7:48 (2013)
Kreutz, C.* ; Raue, A. ; Timmer, J.*
Likelihood based observability analysis and confidence intervals for predictions of dynamic models.
BMC Syst. Biol. 6:120 (2012)
Schmidl, D. ; Hug, S. ; Li, W.B. ; Greiter, M. ; Theis, F.J.
Bayesian model selection validates a biokinetic model for zirconium processing in humans.
BMC Syst. Biol. 6:95 (2012)
Krumsiek, J. ; Suhre, K. ; Illig, T. ; Adamski, J. ; Theis, F.J.
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
BMC Syst. Biol. 5:21 (2011)
Sass, S. ; Dietmann, S. ; Burk, U.C.* ; Brabletz, S.* ; Lutter, D. ; Kowarsch, A. ; Mayer, K.F.X. ; Brabletz, T.* ; Ruepp, A. ; Theis, F.J. ; Wang, Y.
MicroRNAs coordinately regulate protein complexes.
BMC Syst. Biol. 5:136 (2011)
Radrich, K. ; Tsuruoka, Y.* ; Dobson, P.* ; Gevorgyan, A.* ; Swainston, N.* ; Baart, G.* ; Schwartz, J.M.*
Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.
BMC Syst. Biol. 4:114 (2010)
Trümbach, D. ; Graf, C.* ; Pütz, B.* ; Kühne, C.* ; Panhuysen, M.* ; Weber, P.* ; Holsboer, F.* ; Wurst, W. ; Welzl, G. ; Deussing, J.M.*
Deducing corticotropin-releasing hormone receptor type 1 signaling networks from gene expression data by usage of genetic algorithms and graphical Gaussian models.
BMC Syst. Biol. 4:159 (2010)
Wittmann, D.M. ; Krumsiek, J. ; Saez-Rodriguez, J.* ; Lauffenburg, D.A.* ; Klam, S.* ; Theis, F.J.
Transforming Boolean models to continuous models: Methodology and application to T-cell receptor signaling.
BMC Syst. Biol. 3, 98:98 (2009)
Marr, C. ; Geertz, M.* ; Hütt, M.-T.* ; Muskhelisvili, G.*
Dissecting the logical types of network control in gene expression profiles.
BMC Syst. Biol. 2:18 (2008)