Shintani, M.* ; Vestergaard, G.* ; Milaković, M.* ; Kublik, S. ; Smalla, K.* ; Schloter, M. ; Udiković-Kolić, N.*
Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies.
Environ. Microbiol. 25, 3035-3051 (2023)
Duffner, C. ; Kublik, S. ; Fösel, B. ; Frostegård,* ; Schloter, M. ; Bakken, L.* ; Schulz, S.
Genotypic and phenotypic characterization of hydrogenotrophic denitrifiers.
Environ. Microbiol. 24, 1887-1901 (2022)
Ryan, M.J.* ; Schloter, M. ; Berg, G.* ; Kinkel, L.L.* ; Eversole, K.* ; Macklin, J.A.* ; Rybakova, D.* ; Sessitsch, A.*
Towards a unified data infrastructure to support European and global microbiome research: A call to action.
Environ. Microbiol. 23, 372-375 (2021)
Kundu, K. ; Weber, N. ; Griebler, C. ; Elsner, M.
Phenotypic heterogeneity as key factor for growth and survival under oligotrophic conditions.
Environ. Microbiol. 22, 3339-3356 (2020)
Laffite, A.* ; Florio, A.* ; Andrianarisoa, K.S.* ; des Chatelliers, C.C.* ; Schloter-Hai, B. ; Ndaw, S.M.* ; Periot, C.* ; Schloter, M. ; Zeller, B.* ; Poly, F.* ; Le Roux, X.*
Biological inhibition of soil nitrification by forest tree species affects Nitrobacter populations.
Environ. Microbiol. 22, 1141-1153 (2020)
Chowdhury, S.P. ; Babin, D.* ; Sandmann, M.* ; Jacquiod, S.* ; Sommermann, L.* ; Sørensen, S.J.* ; Fliessbach, A.* ; Mäder, P.* ; Geistlinger, J.* ; Smalla, K.* ; Rothballer, M. ; Grosch, R.*
Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce.
Environ. Microbiol. 21, 2426-2439 (2019)
Fillinger, L. ; Zhou, Y. ; Kellermann, C.S. ; Griebler, C.
Non-random processes determine the colonization of groundwater sediments by microbial communities in a pristine porous aquifer.
Environ. Microbiol. 21, 327-342 (2018)
Himmelberg, A.M. ; Brüls, T.* ; Farmani, Z.* ; Weyrauch, P.* ; Barthel, G. ; Schrader, W.* ; Meckenstock, R.U.*
Anaerobic degradation of phenanthrene by a sulfate-reducing enrichment culture.
Environ. Microbiol. 20, 3589-3600 (2018)
Marozava, S. ; Vargas-López, R.* ; Tian, Y.* ; Merl-Pham, J. ; Braster, M.* ; Meckenstock, R.U. ; Smidt, H.* ; Röling, W.F.M.* ; Westerhoff, H.V.*
Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats.
Environ. Microbiol. 20, 2652-2669 (2018)
Weyrauch, P. ; Zaytsev, A.V.* ; Stephan, S.* ; Kocks, L.* ; Schmitz, O.J.* ; Golding, B.T.* ; Meckenstock, R.U.*
Conversion of cis-2-carboxycyclohexylacetyl-CoA in the downstream pathway of anaerobic naphthalene degradation.
Environ. Microbiol. 19, 2819-2830 (2017)
Atashgahi, S.* ; Lu, Y.* ; Zheng, Y.* ; Saccenti, E.* ; Suarez-Diez, M.* ; Ramiro-Garcia, J.* ; Eisenmann, H.* ; Elsner, M. ; Stams, A.J.* ; Springael, D.* ; Dejonghe, W.* ; Smidt, H.*
Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol.
Environ. Microbiol., DOI: 10.1111/1462-2920.13531 (2016)
Bergkemper, F. ; Schöler, A. ; Engel, M. ; Lang, F.* ; Krüger, J.* ; Schloter, M. ; Schulz, S.
Phosphorus depletion in forest soils shapes bacterial communities towards phosphorus recycling systems.
Environ. Microbiol. 18, 1988-2000 (2016)
Michielse, C.B.* ; Studt, L.* ; Janevska, S.* ; Sieber, C.M.K. ; Arndt, B.* ; Espino, J.J.* ; Humpf, H.U.* ; Güldener, U. ; Tudzynski, B.*
The global regulator FfSge1 is required for expression of secondary metabolite gene clusters, but not for pathogenicity in Fusarium fujikuroi.
Environ. Microbiol. 17, 2690–2708 (2015)
Yakimov, M.M.* ; la Cono, V.L.* ; Spada, G.L.* ; Bortoluzzi, G.* ; Messina, E.* ; Smedile, F.* ; Arcadi, E.* ; Borghini, M.* ; Ferrer, M.* ; Schmitt-Kopplin, P. ; Hertkorn, N. ; Cray, J.A.* ; Hallsworth, J.E.* ; Golyshin, P.N.* ; Giuliano, L.*
Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA.
Environ. Microbiol. 17, 364-382 (2015)
Eberlein, C.* ; Johannes, J. ; Mouttaki, H. ; Sadeghi, M.* ; Golding, B.T.* ; Boll, M.* ; Meckenstock, R.U.
ATP-dependent/-independent enzymatic ring reductions involved in the anaerobic catabolism of naphthalene.
Environ. Microbiol. 15, 1832-1841 (2013)
Hurwitz, B.L.* ; Deng, L. ; Poulos, B.T.* ; Sullivan, M.B.*
Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics.
Environ. Microbiol. 15, 1428-1440 (2013)
Ivankov, D.N.* ; Payne, S.H.* ; Galperin, M.Y.* ; Bonissone, S.* ; Pevzner, P.A.* ; Frishman, D.
How many signal peptides are there in bacteria?
Environ. Microbiol. 15, 983-990 (2013)
Duhaime, M.B.* ; Deng, L. ; Poulos, B.T.* ; Sullivan, M.B.*
Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: A rigorous assessment and optimization of the linker amplification method.
Environ. Microbiol. 14, 2526-2537 (2012)
Kaestli, M.* ; Schmid, M. ; Mayo, M.* ; Rothballer, M. ; Harrington, G.* ; Richardson, L.* ; Hill, A.* ; Hill, J.* ; Tuanyok, A.* ; Keim, P.* ; Hartmann, A. ; Currie, B.J.*
Out of the ground: Aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia.
Environ. Microbiol. 14, 2058–2070 (2012)
Mouttaki, H. ; Johannes, J. ; Meckenstock, R.U.
Identification of naphthalene carboxylase as a prototype for the anaerobic activation of non-substituted aromatic hydrocarbons.
Environ. Microbiol. 14, 2770-2774 (2012)
Bergmann, F. ; Selesi, D. ; Weinmaier, T.* ; Tischler, P.* ; Rattei, T.* ; Meckenstock, R.U.
Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47.
Environ. Microbiol. 13, 1125-1137 (2011)
Suárez-Suárez, A.* ; López-López, A.* ; Tovar-Sánchez, A.* ; Yarza, P.* ; Orfila, A.* ; Terrados, J.* ; Arnds, J.* ; Marques, S.* ; Niemann, H.* ; Schmitt-Kopplin, P. ; Amann, R.* ; Rosselló-Mora, R.*
Response of sulfate-reducing bacteria to an artificial oil-spill in a coastal marine sediment.
Environ. Microbiol. 13, 1488-1499 (2011)
Abu Laban, N. ; Selesi, D. ; Rattei, T.* ; Tischler, P.* ; Meckenstock, R.U.
Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron-reducing enrichment culture.
Environ. Microbiol. 12, 2783-2796 (2010)
Herrmann, S.* ; Kleinsteuber, S.* ; Chatzinotas, A.* ; Kuppardt, S.* ; Lüders, T. ; Richnow, H.H.* ; Vogt, C.*
Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing.
Environ. Microbiol. 12, 401-411 (2010)
Glaubitz, S.* ; Lüders, T. ; Abraham, W.R.* ; Jost, G.* ; Jürgens, K.* ; Labrenz, M.*
13C-isotope analyses reveal that chemolithoautotrophic Gamma- and Epsilonproteobacteria feed a microbial food web in a pelagic redoxcline of the central Baltic Sea.
Environ. Microbiol. 11, 326-337 (2009)
Schauss, K. ; Focks, A.* ; Leininger, S.* ; Kotzerke, A.* ; Heuer, H.* ; Thiele-Bruhn, S.* ; Sharma, S. ; Wilke, B.M.* ; Matthies, M.* ; Smalla, K.* ; Munch, J.-C. ; Amelung, W.* ; Kaupenjohann, M.* ; Schloter, M. ; Schleper, C.*
Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils.
Environ. Microbiol. 11, 446-456 (2009)
Babić, K.H. ; Schauss, K. ; Hai, B. ; Sikora, S.* ; Redzepovic, S.* ; Radl, V. ; Schloter, M.
Influence of different Sinorhizobium meliloti inocula on abundance of genes involved in nitrogen transformations in the rhizosphere of alfalfa (Medicago sativa L.).
Environ. Microbiol. 10, 2922-2930 (2008)
Kunapuli, U. ; Griebler, C. ; Beller, H.R.* ; Meckenstock, R.U.
Identification of intermediates formed during anaerobic benzene degradation by an iron-reducing enrichment culture.
Environ. Microbiol. 10, 1703-1712 (2008)
Loy, A.* ; Arnold, R.C. ; Tischler, P. ; Rattei, T. ; Wagner, M.* ; Horn, M.*
probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity.
Environ. Microbiol. 10, 2894-2898 (2008)
Gattinger, A. ; Höfle, M.G.* ; Schloter, M. ; Embacher, A. ; Böhme, F.* ; Munch, J.-C. ; Labrenz, M.*
Traditional cattle manure application determines abundance, diversity and activity of methanogenic Archaea in arable European soil.
Environ. Microbiol. 9, 612-624 (2007)
Meisinger, D.B.* ; Zimmermann, J.* ; Ludwig, W.* ; Schleifer, K.H.* ; Wanner, G.* ; Schmid, M. ; Bennett, P.C.* ; Engel, A.S.* ; Lee, N.M.*
In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically based cave ecosystem (Lower Kane Cave, WY, USA).
Environ. Microbiol. 9, 1523-1534 (2007)
Pages, D.* ; Sanchez, L.* ; Conrod, S.* ; Gidrol, X.* ; Fekete, A. ; Schmitt-Kopplin, P. ; Heulin, T.* ; Achouak, W.*
Exploration of intraclonal adaptation mechanisms of Pseudomonas brassicacearum facing cadmium toxicity.
Environ. Microbiol. 9, 2820-2835 (2007)
Schwarz, J.I.* ; Lüders, T. ; Eckert, W.* ; Conrad, R.*
Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA.
Environ. Microbiol. 9, 223-237 (2007)
Winderl, C. ; Schaefer, S. ; Lüders, T.
Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker.
Environ. Microbiol. 9, 1035-1046 (2007)
Jahn, M.K.* ; Haderlein, S.B.* ; Meckenstock, R.U.
Reduction of Prussian Blue by the two iron-reducing microorganisms Geobacter metallireducens and Shewanella alga.
Environ. Microbiol. 8, 362-367 (2006)
Safinowski, M.* ; Meckenstock, R.U.
Methylation is the initial reaction in anaerobic naphthalene degradation by a sulfate-reducing enrichment culture.
Environ. Microbiol. 8, 347-352 (2006)
Berg, G.* ; Eberl, L.* ; Hartmann, A.
The rhizosphere as a reservoir for opportunistic human pathogenic bacteria.
Environ. Microbiol. 7, 1673-1685 (2005)
Bertaux, J.* ; Schmid, M.* ; Hutzler, P. ; Hartmann, A. ; Garbaye, J.* ; Frey-Klett, P.*
Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N.
Environ. Microbiol. 7, 1786-1795 (2005)
Chan, O.C.* ; Claus, P.* ; Casper, P.* ; Ulrich, A.* ; Lüders, T.* ; Conrad, R.*
Vertical distribution of structure and function of the methanogenic archael community in Lake Dagow sediment.
Environ. Microbiol. 7, 1139-1149 (2005)
Lu, Y.* ; Lüders, T. ; Friedrich, M.W.* ; Conrad, R.*
Detecting active methanogenic populations on rice roots using stable isotope probing.
Environ. Microbiol. 7, 326-336 (2005)
Rothballer, M. ; Schmid, M. ; Fekete, A. ; Hartmann, A.
Comparative in situ analysis of ipdC-gfpmut3 promoter fusions of Azospirillum brasilense strains Sp7 and Sp245.
Environ. Microbiol. 7, 1839-1846 (2005)
Wagner, D.E.* ; Lipski, A.* ; Embacher, A. ; Gattinger, A.
Methane fluxes in permafrost habitats of the Lena Delta: Effects of microbial community structure and organic matter quality.
Environ. Microbiol. 7, 1582-1592 (2005)
Rabus, R.* ; Rattei, T.
The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold arctic sediments.
Environ. Microbiol. 6, 887-902 (2004)