PuSH - Publikationsserver des Helmholtz Zentrums München

Botsidou, P. ; Schloter, M. ; Maraci, Ö.* ; Gschwendtner, S. ; Nagel, R.* ; Forcada, J.* ; Hoffman, J.I.*

Skin, but not gut, microbial communities vary with social density in Antarctic fur seals.

Front. Microbiol. 16:1603500 (2025)

Peters, B.* ; Leonhardt, S.D.* ; Schloter, M. ; Keller, A.*

Direct and indirect effects of land use on microbiomes of trap-nesting solitary bee larvae and nests.

Front. Microbiol. 15:1513096 (2025)

Hyams, Y.* ; Rubin-Blum, M.* ; Rosner, A.* ; Brodsky, L.* ; Rinkevich, Y. ; Rinkevich, B.*

Physiological changes during torpor favor association with Endozoicomonas endosymbionts in the urochordate Botrylloides leachii.

Front. Microbiol. 14:1072053 (2023)

Kurth, J. ; Albrecht, M.* ; Gläser, K.* ; Karsten, U.* ; Vestergaard, G.* ; Armbruster, M.* ; Kublik, S. ; Schmid, C. ; Schloter, M. ; Schulz, S.

Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention.

Front. Microbiol. 14:1169958 (2023)

Nakayama, M. ; Marchi, H. ; Dmitrieva, A. ; Chakraborty, A. ; Merl-Pham, J. ; Hennen, E. ; Le Gleut, R. ; Ruppert, C.* ; Guenther, A.* ; Kahnert, K.* ; Behr, J.* ; Hilgendorff, A. ; Hauck, S.M. ; Adler, H. ; Staab-Weijnitz, C.A.

Quantitative proteomics of differentiated primary bronchial epithelial cells from chronic obstructive pulmonary disease and control identifies potential novel host factors post-influenza A virus infection.

Front. Microbiol. 13:957830 (2023)

Albanese, M. ; Tagawa, T. ; Hammerschmidt, W.

Strategies of Epstein-Barr virus to evade innate antiviral immunity of its human host.

Front. Microbiol. 13:955603 (2022)

Chen, W.* ; Ma, J.* ; Jiang, Y. ; Deng, L. ; Lv, N.* ; Gao, J.* ; Cheng, J.* ; Liang, J.B.* ; Wang, Y.* ; Lan, T.* ; Liao, X.* ; Mi, J.*

Selective maternal seeding and rearing environment from birth to weaning shape the developing piglet gut microbiome.

Front. Microbiol. 13:795101 (2022)

Elbehery, A.H.A.* ; Deng, L.

Insights into the global freshwater virome.

Front. Microbiol. 13:953500 (2022)

Entfellner, E.* ; Li, R. ; Jiang, Y. ; Ru, J. ; Blom, J.* ; Deng, L. ; Kurmayer, R.*

Toxic/bioactive peptide synthesis genes rearranged by insertion sequence elements among the bloom-forming cyanobacteria Planktothrix.

Front. Microbiol. 13:901762 (2022)

Huber, K.J.* ; Pester, M.* ; Eichorst, S.A.* ; Navarrete, A.A.* ; Fösel, B.

Editorial: Acidobacteria - Towards unraveling the secrets of a widespread, though enigmatic, phylum.

Front. Microbiol. 13:960602 (2022)

Kuhl-Nagel, T. ; Rodriguez, P.A. ; Gantner, I. ; Chowdhury, S.P. ; Schwehn, P. ; Rosenkranz, M. ; Schnitzler, J.-P. ; Kublik, S. ; Schloter, M. ; Rothballer, M. ; Falter-Braun, P.

Novel Pseudomonas sp. SCA7 promotes plant growth in two plant families and induces systemic resistance in Arabidopsis thaliana.

Front. Microbiol. 13:923515 (2022)

Mahnkopp-Dirks, F.* ; Radl, V. ; Kublik, S. ; Gschwendtner, S. ; Schloter, M. ; Winkelmann, T.*

Dynamics of bacterial root endophytes of Malus domestica plants grown in field soils affected by apple replant disease.

Front. Microbiol. 13:841558 (2022)

Muster, C.* ; Leiva, D.* ; Morales, C.* ; Grafe, M. ; Schloter, M. ; Carú, M.* ; Orlando, J.*

Peltigera frigida lichens and their Substrates reduce the influence of forest cover change on phosphate solubilizing bacteria.

Front. Microbiol. 13:843490 (2022)

Olmo, R.* ; Wetzels, S.U.* ; Armanhi, J.S.L.* ; Arruda, P.* ; Berg, G.* ; Cernava, T.* ; Cotter, P.D.* ; Araujo, S.C.* ; de Souza, R.S.C.* ; Ferrocino, I.* ; Frisvad, J.C.* ; Georgalaki, M.* ; Hansen, H.H.* ; Kazou, M.* ; Kiran, G.S.* ; Kostic, T.* ; Krauss-Etschmann, S.* ; Kriaa, A.* ; Lange, L.* ; Maguin, E.* ; Mitter, B.* ; Nielsen, M.O.* ; Olivares, M.* ; Quijada, N.M.* ; Romaní-Pérez, M.* ; Sanz, Y.* ; Schloter, M. ; Schmitt-Kopplin, P. ; Seaton, S.C.* ; Selvin, J.* ; Sessitsch, A.* ; Wang, M.* ; Zwirzitz, B.* ; Selberherr, E.* ; Wagner, M.*

Microbiome research as an effective driver of success stories in agrifood systems – a selection of case studies.

Front. Microbiol. 13:834622 (2022)

Chowdhury, S.P. ; Kredics, L.* ; Asiegbu, F.O.* ; Lagunas, B.* ; Schikora, A.*

Editorial: Multilateral interactions in the rhizosphere.

Front. Microbiol. 12:798728 (2021)

Duffner, C. ; Wunderlich, A.* ; Schloter, M. ; Schulz, S. ; Einsiedl, F.*

Strategies to overcome intermediate accumulation during in situ nitrate remediation in groundwater by hydrogenotrophic denitrification.

Front. Microbiol. 12:610437 (2021)

Fillinger, L.* ; Hürkamp, K. ; Stumpp, C. ; Weber, N. ; Forster, D. ; Hausmann, B.* ; Schultz, L.* ; Griebler, C.

Spatial and annual variation in microbial abundance, community composition, and diversity associated with alpine surface snow.

Front. Microbiol. 12:781904 (2021)

Garcia Perez, C. ; Ito, K. ; Geijo, J.* ; Feldbauer, R.* ; Schreiber, N. ; zu Castell, W.

Efficient detection of longitudinal bacteria fission using transfer learning in deep neural networks.

Front. Microbiol. 12:645972 (2021)

Gat, D. ; Reicher, N.* ; Schechter, S.* ; Alayof, M.* ; Tarn, M.D.* ; Wyld, B.V.* ; Zimmermann, R. ; Rudich, Y.*

Size-resolved community structure of bacteria and fungi transported by dust in the middle east.

Front. Microbiol. 12:744117 (2021)

Kuhl-Nagel, T. ; Chowdhury, S.P. ; Uhl, J. ; Rothballer, M.

Genome-based characterization of plant-associated Rhodococcus qingshengii RL1 reveals stress tolerance and plant-microbe interaction traits.

Front. Microbiol. 12:708605 (2021)

Windisch, S.* ; Sommermann, L.* ; Babin, D.* ; Chowdhury, S.P. ; Grosch, R.* ; Moradtalab, N.* ; Walker, F.* ; Höglinger, B.* ; El-Hasan, A.* ; Armbruster, W.* ; Nesme, J.* ; Sørensen, S.J.* ; Schellenberg, I.* ; Geistlinger, J.* ; Smalla, K.* ; Rothballer, M. ; Ludewig, U.* ; Neumann, G.*

Impact of long-term organic and mineral fertilization on rhizosphere metabolites, root-microbial interactions and plant health of lettuce.

Front. Microbiol. 11:597745 (2021)

Ali, P.* ; Shah, A.A.* ; Hasan, F.* ; Hertkorn, N. ; Gonsior, M.* ; Sajjad, W.* ; Chen, F.*

A glacier bacterium produces high yield of cryoprotective exopolysaccharide.

Front. Microbiol. 10:3096 (2020)

Cania, B. ; Vestergaard, G. ; Suhadolc, M.* ; Mihelič, R.* ; Krauss, M.* ; Fliessbach, A.* ; Mäder, P.* ; Szumełda, A.* ; Schloter, M. ; Schulz, S.

Site-specific conditions change the response of bacterial producers of soil structure-stabilizing agents such as exopolysaccharides and lipopolysaccharides to tillage intensity.

Front. Microbiol. 11:568 (2020)

Herpell, J.B.* ; Schindler, F.* ; Bejtović, M.* ; Fragner, L.* ; Diallo, B.* ; Bellaire, A.* ; Kublik, S. ; Fösel, B. ; Gschwendtner, S. ; Kerou, M.* ; Schloter, M. ; Weckwerth, W.*

The potato yam phyllosphere ectosymbiont Paraburkholderia sp. Msb3 is a potent growth promotor in tomato.

Front. Microbiol. 11:581 (2020)

Hofmann, R. ; Uhl, J. ; Hertkorn, N. ; Griebler, C.

Linkage between dissolved organic matter transformation, bacterial carbon production, and diversity in a shallow oligotrophic aquifer: Results from flow-through sediment microcosm experiments.

Front. Microbiol. 11:543567 (2020)

Marozava, S. ; Merl-Pham, J. ; Müller, H.* ; Meckenstock, R.U.*

Adaptation of carbon source utilization patterns of Geobacter metallireducens during sessile growth.

Front. Microbiol. 11:1271 (2020)

Michas, A. ; Harir, M. ; Lucio, M. ; Vestergaard, G.* ; Himmelberg, A.M. ; Schmitt-Kopplin, P. ; Lueders, T.* ; Hatzinikolaou, D.G.* ; Schöler, A.* ; Rabus, R.* ; Schloter, M.

Sulfate alters the competition among microbiome members of sediments chronically exposed to asphalt.

Front. Microbiol. 11:556793 (2020)

Simonin, S.* ; Roullier-Gall, C.* ; Ballester, J.* ; Schmitt-Kopplin, P. ; Quintanilla-Casas, B.* ; Vichi, S.* ; Peyron, D.* ; Alexandre, H.* ; Tourdot-Maréchal, R.*

Bio-protection as an alternative to sulphites: Impact on chemical and microbial characteristics of red wines.

Front. Microbiol. 11:1308 (2020)

Tedersoo, L.* ; Anslan, S.* ; Bahram, M.* ; Drenkhan, R.* ; Pritsch, K. ; Buegger, F. ; Padari, A.* ; Hagh-Doust, N.* ; Mikryukov, V.* ; Gohar, D.* ; Amiri, R.* ; Hiiesalu, I.* ; Lutter, R.* ; Rosenvald, R.* ; Rahn, E.* ; Adamson, K.* ; Drenkhan, T.* ; Tullus, H.* ; Jurimaa, K.* ; Sibul, I.* ; Otsing, E.* ; Polme, S.* ; Metslaid, M.* ; Loit, K.* ; Agan, A.* ; Puusepp, R.* ; Varik, I.* ; Koljalg, U.* ; Abarenkov, K.*

Regional-scale in-depth analysis of soil fungal diversity reveals strong pH and plant species effects in Northern Europe.

Front. Microbiol. 11:1953 (2020)

Guo, Y. ; Ghirardo, A. ; Weber, B. ; Schnitzler, J.-P. ; Benz, J.P.* ; Rosenkranz, M.

Trichoderma species differ in their volatile profiles and in antagonism towards ectomycorrhiza Laccaria bicolor.

Front. Microbiol. 10:891 (2019)

Jiang, Y. ; Huang, H. ; Ma, T. ; Ru, J. ; Blank, S.* ; Kurmayer, R.* ; Deng, L.

Temperature response of planktonic microbiota in remote alpine lakes.

Front. Microbiol. 10:1714 (2019)

Kaderali, L.* ; Theis, F.J. ; Ganusov, V.V.* ; Ciupe, S.M.* ; Mehr, R.* ; Ribeiro, R.M.* ; Hernandez-Vargas, E.A.*

Editorial: Integrative computational systems biology approaches in immunology and medicine.

Front. Microbiol. 9:3338 (2019)

Stöger, T. ; Adler, H.

"Novel" triggers of herpesvirus reactivation and their potential health relevance.

Front. Microbiol. 9:3207 (2019)

Zhu, B. ; Wang, J.* ; Bradford, L. ; Ettwig, K.* ; Hu, B.* ; Lueders, T.

Nitric oxide dismutase (NOD) genes as a functional marker for the diversity and phylogeny of methane-driven oxygenic denitrifiers.

Front. Microbiol. 10:1577 (2019)

Bradford, L. ; Vestergaard, G. ; Táncsics, A.* ; Zhu, B. ; Schloter, M.* ; Lueders, T.

Transcriptome-stable isotope probing provides targeted functional and taxonomic insights into microaerobic pollutant-degrading aquifer microbiota.

Front. Microbiol. 9:2696 (2018)

Castañeda-Tamez, P.* ; Ramírez-Peris, J.* ; Pérez-Velázquez, J. ; Kuttler, C.* ; Jalalimanesh, A.* ; Saucedo-Mora, M.A.* ; Jiménez-Cortés, J.G.* ; Maeda, T.* ; González, Y.* ; Tomás, M.* ; Wood, T.K.* ; García-Contreras, R.*

Pyocyanin restricts social cheating in Pseudomonas aeruginosa.

Front. Microbiol. 9:1348 (2018)

Elbehery, A.H.A. ; Feichtmayer, J. ; Singh, D.* ; Griebler, C. ; Deng, L.

The human virome protein cluster database (HVPC): A human viral metagenomic database for diversity and function annotation.

Front. Microbiol. 9:1110 (2018)

Pérez-de-Mora, A. ; Lacourt, A.* ; McMaster, M.L.* ; Liang, X.M.* ; Dworatzek, S.M.* ; Edwards, E.A.*

Chlorinated electron acceptor abundance drives selection of Dehalococcoides mccartyi (D. mccartyi) strains in dechlorinating enrichment cultures and groundwater environments.

Front. Microbiol. 9:e812 (2018)

Entfellner, E.* ; Frei, M.* ; Christiansen, G.* ; Deng, L. ; Blom, J.* ; Kurmayer, R.*

Evolution of anabaenopeptin peptide structural variability in the cyanobacterium planktothrix.

Front. Microbiol. 8:219 (2017)

Feichtmayer, J. ; Deng, L. ; Griebler, C.

Antagonistic microbial interactions: Contributions and potential applications for controlling pathogens in the aquatic systems.

Front. Microbiol. 8, 2192 (2017)

Niehaus, E.M.* ; Schumacher, J.* ; Burkhardt, I.* ; Rabe, P.* ; Spitzer, E.* ; Münsterkötter, M. ; Güldener, U.* ; Sieber, C.M.K.* ; Dickschat, J.S.* ; Tudzynski, B.*

The GATA-type transcription factor Csm1 regulates conidiation and secondary metabolism in Fusarium fujikuroi.

Front. Microbiol. 8:1175 (2017)

Saucedo-Mora, M.A.* ; Castaneda-Tamez, P.* ; Cazares, A.* ; Pérez-Velázquez, J. ; Hense, B.A. ; Cazares, D.* ; Figueroa, W.* ; Carballo, M.* ; Guarneros, G.* ; Perez-Eretza, B.* ; Cruz, N.* ; Nishiyama, Y.* ; Maeda, T.* ; Belmont-Diaz, J.A.* ; Wood, T.K.* ; García-Contreras, R.*

Selection of functional quorum sensing systems by lysogenic bacteriophages in Pseudomonas aeruginosa.

Front. Microbiol. 8:1669 (2017)

Schuster, M.* ; Sexton, D.J.* ; Hense, B.A.

Why quorum sensing controls private goods.

Front. Microbiol. 8:885 (2017)

Schuster, M.* ; Sexton, D.J.* ; Hense, B.A.

Corrigendum: Why quorum sensing controls private goods [Front. Microbiol, 8, (2017) (885)] doi: 10.3389/fmicb.2017.00885.

Front. Microbiol. 8:1420 (2017)

Weiland-Bräuer, N.* ; Fischer, M.A.* ; Schramm, K.-W. ; Schmitz, R.A.*

Polychlorinated biphenyl (PCB)-degrading potential of microbes present in a cryoconite of Jamtalferner glacier.

Front. Microbiol. 8:1105 (2017)

Boedi, S.* ; Berger, H.* ; Sieber, C.M.K.* ; Münsterkötter, M. ; Maloku, I.* ; Warth, B.* ; Sulyok, M.* ; Lemmens, M.* ; Schuhmacher, R.* ; Güldener, U.* ; Strauss, J.*

Comparison of Fusarium graminearum transcriptomes on living or dead wheat differentiates substrate-responsive and defense-responsive genes.

Front. Microbiol. 7:1113 (2016)

Kramer, S.* ; Dibbern, D. ; Moll, J.* ; Huenninghaus, M.* ; Koller, R.* ; Krueger, D.* ; Marhan, S.* ; Urich, T.* ; Wubet, T.* ; Bonkowski, M.* ; Buscot, F.* ; Lueders, T. ; Kandeler, E.*

Resource partitioning between bacteria, fungi, and protists in the detritusphere of an agricultural soil.

Front. Microbiol. 7:1524 (2016)

Nesme, J. ; Achouak, W.* ; Agathos, S.N.* ; Bailey, M.* ; Baldrian, P.* ; Brunel, D.* ; Frostegård,* ; Heulin, T.* ; Jansson, J.K.* ; Jurkevitch, E.* ; Kruus, K.L.* ; Kowalchuk, G.A.* ; Lagares, A.* ; Lappin-Scott, H.M.* ; Lemanceau, P.* ; Le Paslier, D.* ; Mandic-Mulec, I.* ; Murrell, J.C.* ; Myrold, D.D.* ; Nalin, R.* ; Nannipieri, P.* ; Neufeld, J.D.* ; O'Gara, F.* ; Parnell, J.J.* ; Pühler, A.* ; Pylro, V.* ; Ramos, J.L.* ; Roesch, L.F.* ; Schloter, M. ; Schleper, C.* ; Sczyrba, A.* ; Sessitsch, A.* ; Sjöling, S.* ; Sørensen, J.* ; Sørensen, S.J.* ; Tebbe, C.C.* ; Topp, E.M.* ; Tsiamis, G.* ; van Elsas, J.D.* ; van Keulen, G.* ; Widmer, F.* ; Wagner, M.* ; Zhang, T.* ; Zhang, X.* ; Zhao, L.* ; Zhu, Y.G.* ; Vogel, T.M.* ; Simonet, P.*

Back to the future of soil metagenomics.

Front. Microbiol. 7:73 (2016)

Stempfhuber, B. ; Richter-Heitmann, T.* ; Regan, K.M.* ; Kölbl, A.* ; Kaul, P.* ; Marhan, S.* ; Sikorski, J.* ; Overmann, J.* ; Friedrich, M.W.* ; Kandeler, E.* ; Schloter, M.

Spatial interaction of archaeal ammonia-oxidizers and nitrite-oxidizing bacteria in an unfertilized grassland soil.

Front. Microbiol. 6:1567 (2016)

Callewaert, C.* ; van Nevel, S.* ; Kerckhof, F.M.* ; Granitsiotis, M.S. ; Boon, N.*

Bacterial exchange in household washing machines.

Front. Microbiol. 6:1381 (2015)

Chowdhury, S.P. ; Hartmann, A. ; Gao, X.* ; Borriss, R.*

Biocontrol mechanism by root-associated Bacillus amyloliquefaciens FZB42 - a review.

Front. Microbiol. 6:780 (2015)

Gründger, F.* ; Jimenez, N.* ; Thielemann, T.* ; Straaten, N.* ; Lüders, T. ; Richnow, H.-H.* ; Krüger, M.*

Microbial methane formation in deep aquifers of a coal-bearing sedimentary basin, Germany.

Front. Microbiol. 6:200 (2015)

Uksa, M. ; Schloter, M. ; Endesfelder, D. ; Kublik, S. ; Engel, M. ; Kautz, T.* ; Köpke, U.* ; Fischer, D.