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Rauer,\ L.\ ; De Tomassi,\ A.*\ ; Müller,\ C.L.\ ; Hülpüsch,\ C.*\ ; Traidl-Hoffmann,\ C.\ ; Reiger,\ M.\ ; Neumann,\ A.U.
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De-biasing microbiome sequencing data: Bacterial morphology-based correction of extraction bias and correlates of chimera formation.
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Microbiome 13:38 (2025)
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Alahmad,\ A.*\ ; Harir,\ M.\ ; Fochesato,\ S.*\ ; Tulumello,\ J.*\ ; Walker,\ A.\ ; Barakat,\ M.*\ ; Ndour,\ P.M.S.*\ ; Schmitt-Kopplin,\ P.\ ; Cournac,\ L.*\ ; Laplaze,\ L.*\ ; Heulin,\ T.*\ ; Achouak,\ W.*
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Unraveling the interplay between root exudates, microbiota, and rhizosheath formation in pearl millet.
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Microbiome 12:1 (2024)
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Amar,\ Y.*\ ; Rogner,\ D.*\ ; Silva,\ R.*\ ; Fösel,\ B.\ ; Ud-Dean,\ M.\ ; Lagkouvardos,\ I.*\ ; Steimle-Grauer,\ S.A.*\ ; Niedermeier,\ S.*\ ; Kublik,\ S.\ ; Jargosch,\ M.*\ ; Heinig,\ M.\ ; Thomas,\ J.\ ; Eyerich,\ S.\ ; Wikström,\ J.D.*\ ; Schloter,\ M.\ ; Eyerich,\ K.*\ ; Biedermann,\ T.*\ ; Köberle,\ M.*
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Darier\'s disease exhibits a unique cutaneous microbial dysbiosis associated with inflammation and body malodour.
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Microbiome 11:162 (2023)
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Amar,\ Y.*\ ; Rogner,\ D.*\ ; Silva,\ R.*\ ; Fösel,\ B.\ ; Ud-Dean,\ M.\ ; Lagkouvardos,\ I.*\ ; Steimle‑Grauer,\ S.A.*\ ; Niedermeier,\ S.*\ ; Kublik,\ S.\ ; Jargosch,\ M.*\ ; Heinig,\ M.\ ; Thomas,\ J.\ ; Eyerich,\ S.\ ; Wikström,\ J.D.*\ ; Schloter,\ M.\ ; Eyerich,\ K.*\ ; Biedermann,\ T.*\ ; Köberle,\ M.*
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Correction: Darier’s disease exhibits a unique cutaneous microbial dysbiosis associated with inflammation and body malodour (Microbiome, (2023), 11, 1, (162), 10.1186/s40168-023-01587-x).
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Microbiome 11:206 (2023)
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Münzker,\ J.*\ ; Haase,\ N.*\ ; Till,\ A.*\ ; Sucher,\ R.*\ ; Haange,\ S.B.*\ ; Nemetschke,\ L.*\ ; Gnad,\ T.*\ ; Jäger,\ E.*\ ; Chen,\ J.*\ ; Riede,\ S.J.*\ ; Chakaroun,\ R.*\ ; Massier,\ L.*\ ; Kovacs,\ P.*\ ; Ost,\ M.*\ ; Rolle-Kampczyk,\ U.*\ ; Jehmlich,\ N.*\ ; Weiner,\ J.*\ ; Heiker,\ J.T.\ ; Klöting,\ N.\ ; Seeger,\ G.*\ ; Morawski,\ M.*\ ; Keitel,\ V.*\ ; Pfeifer,\ A.*\ ; von Bergen,\ M.*\ ; Heeren,\ J.*\ ; Krügel,\ U.*\ ; Fenske,\ W.K.*
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Functional changes of the gastric bypass microbiota reactivate thermogenic adipose tissue and systemic glucose control via intestinal FXR-TGR5 crosstalk in diet-induced obesity.
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Microbiome 10:96 (2022)
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Sbierski-Kind,\ J.*\ ; Grenkowitz,\ S.*\ ; Schlickeiser,\ S.*\ ; Sandforth,\ A.\ ; Friedrich,\ M.*\ ; Kunkel,\ D.*\ ; Glauben,\ R.*\ ; Brachs,\ S.*\ ; Mai,\ K.*\ ; Thürmer,\ A.*\ ; Radonić,\ A.*\ ; Drechsel,\ O.*\ ; Turnbaugh,\ P.J.*\ ; Bisanz,\ J.E.*\ ; Volk,\ H.D.*\ ; Spranger,\ J.*\ ; Jumpertz von Schwartzenberg,\ R.
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Effects of caloric restriction on the gut microbiome are linked with immune senescence.
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Microbiome 10:57 (2022)
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Sinha,\ A.*\ ; Li,\ Y.*\ ; Mirzaei,\ M.K.\ ; Shamash,\ M.*\ ; Samadfam,\ R.*\ ; King,\ I.L.*\ ; Maurice,\ C.F.*
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Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis.
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Microbiome 10:105 (2022)
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Amar,\ Y.\ ; Lagkouvardos,\ I.*\ ; Silva,\ R.L.\ ; Ishola,\ O.A.\ ; Fösel,\ B.\ ; Kublik,\ S.\ ; Schöler,\ A.\ ; Niedermeier,\ S.*\ ; Bleuel,\ R.\ ; Zink,\ A.\ ; Neuhaus,\ K.*\ ; Schloter,\ M.\ ; Biedermann,\ T.\ ; Köberle,\ M.*
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Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA.
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Microbiome 9:123 (2021)
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Breuninger,\ T.\ ; Wawro,\ N.\ ; Breuninger,\ J.*\ ; Reitmeier,\ S.*\ ; Clavel,\ T.*\ ; Six-Merker,\ J.\ ; Pestoni,\ G.*\ ; Rohrmann,\ S.*\ ; Rathmann,\ W.*\ ; Peters,\ A.\ ; Grallert,\ H.\ ; Meisinger,\ C.\ ; Haller,\ D.*\ ; Linseisen,\ J.
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Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation.
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Microbiome 9:61 (2021)
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Hwang,\ Y.*\ ; Schulze-Makuch,\ D.*\ ; Arens,\ F.L.*\ ; Saenz Medina,\ J.S.\ ; Adam,\ P.S.*\ ; Sager,\ C.*\ ; Bornemann,\ T.L.V.*\ ; Zhao,\ W.*\ ; Zhang,\ Y.*\ ; Airo,\ A.*\ ; Schloter,\ M.\ ; Probst,\ A.J.*
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Leave no stone unturned: Individually adapted xerotolerant \Thaumarchaeota \sheltered below the boulders of the Atacama Desert hyperarid core.
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Microbiome 9:234 (2021)
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Berg,\ G.*\ ; Rybakova,\ D.*\ ; Fischer,\ D.\ ; Cernava,\ T.*\ ; Vergès,\ M.C.C.*\ ; Charles,\ T.*\ ; Chen,\ X.*\ ; Cocolin,\ L.*\ ; Eversole,\ K.*\ ; Corral,\ G.H.*\ ; Kazou,\ M.*\ ; Kinkel,\ L.*\ ; Lange,\ L.*\ ; Lima,\ N.*\ ; Loy,\ A.*\ ; Macklin,\ J.A.*\ ; Maguin,\ E.*\ ; Mauchline,\ T.*\ ; McClure,\ R.*\ ; Mitter,\ B.*\ ; Ryan,\ M.*\ ; Sarand,\ I.*\ ; Smidt,\ H.*\ ; Schelkle,\ B.*\ ; Roume,\ H.*\ ; Kiran,\ G.S.*\ ; Selvin,\ J.*\ ; Souza,\ R.S.C.d.*\ ; van Overbeek,\ L.*\ ; Singh,\ B.K.*\ ; Wagner,\ M.*\ ; Walsh,\ A.*\ ; Sessitsch,\ A.*\ ; Schloter,\ M.
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Microbiome definition re-visited: Old concepts and new challenges.
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Microbiome 8:103 (2020)
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Berg,\ G.*\ ; Rybakova,\ D.*\ ; Fischer,\ D.\ ; Cernava,\ T.*\ ; Vergès,\ M.C.C.*\ ; Charles,\ T.*\ ; Chen,\ X.*\ ; Cocolin,\ L.*\ ; Eversole,\ K.*\ ; Corral,\ G.H.*\ ; Kazou,\ M.*\ ; Kinkel,\ L.*\ ; Lange,\ L.*\ ; Lima,\ N.*\ ; Loy,\ A.*\ ; Macklin,\ J.A.*\ ; Maguin,\ E.*\ ; Mauchline,\ T.*\ ; McClure,\ R.*\ ; Mitter,\ B.*\ ; Ryan,\ M.*\ ; Sarand,\ I.*\ ; Smidt,\ H.*\ ; Schelkle,\ B.*\ ; Roume,\ H.*\ ; Kiran,\ G.S.*\ ; Selvin,\ J.*\ ; de Souza,\ R.S.C.*\ ; van Overbeek,\ L.*\ ; Singh,\ B.K.*\ ; Wagner,\ M.*\ ; Walsh,\ A.*\ ; Sessitsch,\ A.*\ ; Schloter,\ M.
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Microbiome definition re-visited: Old concepts and new challenges (vol 8, 103, 2020).
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Microbiome 8:119 (2020)
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Saenz Medina,\ J.S.\ ; Marques,\ T.V.*\ ; Barone,\ R.S.C.*\ ; Cyrino,\ J.E.P.*\ ; Kublik,\ S.\ ; Nesme,\ J.\ ; Schloter,\ M.\ ; Rath,\ S.*\ ; Vestergaard,\ G.
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Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish \Piaractus mesopotamicus\.
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Microbiome 7:24 (2019)
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Michas,\ A.\ ; Vestergaard,\ G.\ ; Trautwein,\ K.*\ ; Avramidis,\ P.*\ ; Hatzinikolaou,\ D.G.*\ ; Vorgias,\ C.E.*\ ; Wilkes,\ H.*\ ; Rabus,\ R.*\ ; Schloter,\ M.\ ; Schöler,\ A.
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More than 2500\ years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis.
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Microbiome 5, 118:118 (2017)
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Michas,\ A.\ ; Vestergaard,\ G.\ ; Trautwein,\ K.*\ ; Hatzinikolaou,\ D.G.*\ ; Vorgias,\ C.E.*\ ; Wilkes,\ H.*\ ; Rabus,\ R.*\ ; Schloter,\ M.\ ; Schöler,\ A.
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Erratum: Correction to: More than 2500\ years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis (Microbiome (2017) 5 1 (118)).
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Microbiome 5:136 (2017)
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Endesfelder,\ D.\ ; Engel,\ M.\ ; Davis-Richardson,\ A.G.*\ ; Ardissone,\ A.N.*\ ; Achenbach,\ P.\ ; Hummel,\ S.\ ; Winkler,\ C.\ ; Atkinson,\ M.*\ ; Schatz,\ D.*\ ; Triplett,\ E.W.*\ ; Ziegler,\ A.-G.\ ; zu Castell,\ W.
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Towards a functional hypothesis relating anti-islet cell autoimmunity to the dietary impact on microbial communities and butyrate production.
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Microbiome 4:17 (2016)
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