PuSH - HMGU Publikationen https://push-zb.helmholtz-munich.de PuSH - Publikationen-Server des Helmholtz Zentrums München de-de <![CDATA[Weiler, P. & Theis, F.J. CellRank: Consistent and data view agnostic fate mapping for single-cell genomics. Nat. Protoc., DOI: 10.1038/s41596-025-01314-w (2026)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76759&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76759&la=de Wed, 18 Mar 2026 00:00:00 +0000 <![CDATA[Berezin, O. et al. Multiplexed genetic tags for electron and fluorescence microscopy. Nat. Protoc., DOI: 10.1038/s41596-025-01260-7 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76090&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76090&la=de Tue, 25 Nov 2025 00:00:00 +0000 <![CDATA[Blondeel, E.* et al. Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids. Nat. Protoc. 20, 2899-2941 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=74030&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=74030&la=de Sat, 10 May 2025 00:00:00 +0000 <![CDATA[Blondeel, E.* et al. Author Correction: Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids. Nat. Protoc., DOI: 10.1038/s41596-025-01223-y (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=74893&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=74893&la=de Mon, 16 Jun 2025 00:00:00 +0000 <![CDATA[El Nahhas, O.S.M.* et al. From whole-slide image to biomarker prediction: End-to-end weakly supervised deep learning in computational pathology. Nat. Protoc. 20, 293-316 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=71733&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=71733&la=de Thu, 24 Oct 2024 00:00:00 +0000 <![CDATA[Müller, A. et al. Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets. Nat. Protoc., DOI: 10.1038/s41596-024-00957-5 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70100&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70100&la=de Mon, 29 Apr 2024 00:00:00 +0000 <![CDATA[Cai, R. et al. Whole-mouse clearing and imaging at the cellular level with vDISCO. Nat. Protoc. 18, 1197-1242 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67356&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67356&la=de Wed, 01 Feb 2023 00:00:00 +0000 <![CDATA[Collins, A.* et al. Measuring DNA modifications with the comet assay: A compendium of protocols. Nat. Protoc. 18, 929-989 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67341&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67341&la=de Wed, 01 Feb 2023 00:00:00 +0000 <![CDATA[Fischer, A. et al. In vivo fluorescent labeling and tracking of extracellular matrix. Nat. Protoc. 18, 2876-2890 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68012&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68012&la=de Fri, 06 Oct 2023 00:00:00 +0000 <![CDATA[Müller, P.* et al. High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities. Nat. Protoc., 38 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68975&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68975&la=de Wed, 20 Dec 2023 00:00:00 +0000 <![CDATA[Prudente de Mello, N. ; Fecher, C.* ; Pastor, A.M.* ; Perocchi, F. & Misgeld, T.* Ex vivo immunocapture and functional characterization of cell-type-specific mitochondria using MitoTag mice. Nat. Protoc. 18, 2181-2220 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68503&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68503&la=de Wed, 18 Oct 2023 00:00:00 +0000 <![CDATA[Mai, H. et al. Scalable tissue labeling and clearing of intact human organs. Nat. Protoc. 17, 2188-2215 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=65764&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=65764&la=de Thu, 03 Nov 2022 00:00:00 +0000 <![CDATA[Brix, N.* ; Samaga, D. ; Belka, C. ; Zitzelsberger, H. & Lauber, K. Analysis of clonogenic growth in vitro. Nat. Protoc. 16, 4963-4991 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63374&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63374&la=de Thu, 04 Nov 2021 00:00:00 +0000 <![CDATA[Weisheit, I.* et al. Simple and reliable detection of CRISPR-induced on-target effects by qgPCR and SNP genotyping. Nat. Protoc. 16, 1714-1739 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61403&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61403&la=de Fri, 23 Apr 2021 00:00:00 +0000 <![CDATA[Yépez, V.A.* et al. Detection of aberrant gene expression events in RNA sequencing data. Nat. Protoc. 16, 1276–1296 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61091&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61091&la=de Mon, 08 Feb 2021 00:00:00 +0000 <![CDATA[Hagn, F. ; Nasr, M.L.* & Wagner, G.* Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR. Nat. Protoc. 13, 79-98 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52651&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52651&la=de Tue, 09 Jan 2018 00:00:00 +0000 <![CDATA[Barbosa, J.S. ; di Giaimo, R.* ; Götz, M. & Ninkovic, J. Single-cell in vivo imaging of adult neural stem cells in the zebrafish telencephalon. Nat. Protoc. 11, 1360-1370 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49030&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49030&la=de Sat, 09 Jul 2016 00:00:00 +0000 <![CDATA[Ly, A. et al. High-mass-resolution MALDI mass spectrometry imaging of metabolites from formalin-fixed paraffin-embedded tissue. Nat. Protoc. 11, 1428-1443 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49083&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49083&la=de Tue, 26 Jul 2016 00:00:00 +0000 <![CDATA[Winkler, T.W.* et al. Quality control and conduct of genome-wide association meta-analyses. Nat. Protoc. 9, 1192-1212 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31949&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31949&la=de Mon, 18 Aug 2014 00:00:00 +0000 <![CDATA[Desbordes, S.C. & Studer, L.* Adapting human pluripotent stem cells to high-throughput and high-content screening. Nat. Protoc. 8, 111-130 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=22404&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=22404&la=de Fri, 01 Feb 2013 00:00:00 +0000 <![CDATA[Wefers, B. et al. Generation of targeted mouse mutants by embryo microinjection of TALEN mRNA. Nat. Protoc. 8, 2355-2379 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28613&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28613&la=de Mon, 09 Dec 2013 00:00:00 +0000 <![CDATA[Fischer, J. et al. Prospective isolation of adult neural stem cells from the mouse subependymal zone. Nat. Protoc. 6, 1981-1989 (2011)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6792&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6792&la=de Wed, 14 Dec 2011 00:00:00 +0000 <![CDATA[Heinrich, C.* et al. Generation of subtype-specific neurons from postnatal astroglia of the mouse cerebral cortex. Nat. Protoc. 6, 214-228 (2011)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5935&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5935&la=de Wed, 13 Apr 2011 00:00:00 +0000 <![CDATA[Ortega, F.* et al. Using an adherent cell culture of the mouse subependymal zone to study the behavior of adult neural stem cells on a single-cell level. Nat. Protoc. 6, 1847-1859 (2011)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6692&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6692&la=de Fri, 25 Nov 2011 00:00:00 +0000 <![CDATA[Razansky, D. ; Bühler, A. & Ntziachristos, V. Volumetric real-time multispectral optoacoustic tomography of biomarkers. Nat. Protoc. 6, 1121-1129 (2011)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6552&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6552&la=de Tue, 20 Sep 2011 00:00:00 +0000 <![CDATA[Haller, F. ; Prehn, C. & Adamski, J. Quantification of steroids in human and mouse plasma using online solid phase extraction coupled to liquid chromatography tandem mass spectrometry. Nat. Protoc., DOI: 10.1038/nprot.2010.22 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=17153&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=17153&la=de Fri, 31 Dec 2010 00:00:00 +0000 <![CDATA[Neufeld, J.D.* et al. DNA stable-isotope probing. Nat. Protoc. 2, 860-866 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5815&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5815&la=de Sun, 30 Dec 2007 00:00:00 +0000 <![CDATA[Whiteley, A.S.* ; Thomson, B.* ; Lüders, T. & Manefield, M.* RNA stable-isotope probing. Nat. Protoc. 2, 838-844 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1759&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1759&la=de Tue, 03 Jul 2007 00:00:00 +0000