PuSH - HMGU Publikationen https://push-zb.helmholtz-munich.de PuSH - Publikationen-Server des Helmholtz Zentrums München de-de <![CDATA[Kültz, D.* et al. Proteome-wide 4-hydroxy-2-nonenal signature of oxidative stress in the marine invasive tunicate Botryllus schlosseri. Proteomics 25, 12-25 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75422&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75422&la=de Tue, 04 Nov 2025 00:00:00 +0000 <![CDATA[Tamessar, C.T.* et al. Advancing understanding of the protein composition of human seminal extracellular vesicles. Proteomics:e70088 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76295&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76295&la=de Mon, 15 Dec 2025 00:00:00 +0000 <![CDATA[Degroote, R.L.* et al. Diabetic retinopathy from the vitreous proteome perspective: The INSC94Y transgenic pig model study. Proteomics, DOI: 10.1002/pmic.202300591:e2300591 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=71450&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=71450&la=de Fri, 27 Sep 2024 00:00:00 +0000 <![CDATA[Kültz, D.* et al. Deep quantitative proteomics of North American Pacific coast star tunicate (Botryllus schlosseri). Proteomics:e2300628 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70033&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70033&la=de Wed, 24 Apr 2024 00:00:00 +0000 <![CDATA[Sun, B.* et al. Improving SWATH-MS analysis by deep-learning. Proteomics 23:e2200179 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67129&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67129&la=de Tue, 17 Jan 2023 00:00:00 +0000 <![CDATA[Witting, M. (Re-)use and (re-)analysis of publicly available metabolomics data. Proteomics 23:e2300032 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68321&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68321&la=de Wed, 18 Oct 2023 00:00:00 +0000 <![CDATA[Ruzafa, N.* ; Pereiro, X.* ; Lepper, M.F. ; Hauck, S.M. & Vecino, E.* A proteomics approach to identify candidate proteins secreted by Müller glia that protect ganglion cells in the retina. Proteomics 11:e1700321 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53395&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53395&la=de Thu, 21 Jun 2018 00:00:00 +0000 <![CDATA[Hauck, S.M. ; Lepper, M.F. ; Hertl, M.* ; Sekundo, W.* & Deeg, C.A.* Proteome dynamics in biobanked horse peripheral blood derived lymphocytes (PBL) with induced autoimmune uveitis. Proteomics 17:1700013 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=51762&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=51762&la=de Wed, 13 Sep 2017 00:00:00 +0000 <![CDATA[Mossina, A. et al. Cigarette smoke alters the secretome of lung epithelial cells. Proteomics 17:1600243 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50091&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50091&la=de Wed, 14 Dec 2016 00:00:00 +0000 <![CDATA[Lahiri, S.* et al. In situ detection of histone variants and modifications in mouse brain using imaging mass spectrometry. Proteomics 16, 437-447 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47408&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47408&la=de Wed, 02 Dec 2015 00:00:00 +0000 <![CDATA[Mai, H.J.* et al. Iron and FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT)-dependent regulation of proteins and genes in Arabidopsis thaliana roots. Proteomics 15, 3030-3047 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=45085&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=45085&la=de Wed, 03 Jun 2015 00:00:00 +0000 <![CDATA[Porras, P.* et al. A visual review of the interactome of LRRK2: Using deep-curated molecular interaction data to represent biology. Proteomics 15, 1390-1404 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44016&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44016&la=de Sun, 05 Apr 2015 00:00:00 +0000 <![CDATA[Maier, S.K. ; Bashkueva, K.* ; Rösli, C.* ; Skerra, A.* & Kuster, B.* PAS-cal: A repetitive peptide sequence calibration standard for MALDI mass spectrometry. Proteomics 14, 2427-2431 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31964&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31964&la=de Sat, 23 Aug 2014 00:00:00 +0000 <![CDATA[Sun, N. et al. High-resolution metabolite imaging of light and dark treated retina using MALDI-FTICR mass spectrometry. Proteomics 14, 913-923 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=29077&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=29077&la=de Mon, 27 Jan 2014 00:00:00 +0000 <![CDATA[Zahedi, R.P.* ; Ueffing, M. & Sickmann, A.* Proteomics - moving from inventory to personalized medicine? Proteomics 14, 1953 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=34378&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=34378&la=de Mon, 10 Nov 2014 00:00:00 +0000 <![CDATA[Yentrapalli, R. et al. Quantitative proteomic analysis reveals induction of premature senescence in human umbilical vein endothelial cells exposed to chronic low-dose rate gamma radiation. Proteomics 13, 1096-1107 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=24330&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=24330&la=de Thu, 09 May 2013 00:00:00 +0000 <![CDATA[Braun, P. Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays. Proteomics 12, 1499-1518 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7688&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7688&la=de Thu, 12 Jul 2012 00:00:00 +0000 <![CDATA[Braun, P. & Gingras, A.C.* History of protein-protein interactions: From egg-white to complex networks. Proteomics 12, 1478-1498 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7687&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7687&la=de Thu, 12 Jul 2012 00:00:00 +0000 <![CDATA[Dong, G.F.* ; Callegari, E.* ; Gloeckner, C.J. ; Ueffing, M. & Wang, H.M.* Mass spectrometric identification of novel posttranslational modification sites in huntingtin. Proteomics 12, 2060-2064 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7759&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7759&la=de Thu, 19 Jul 2012 00:00:00 +0000 <![CDATA[Merl-Pham, J. ; Ueffing, M. ; Hauck, S.M. & von Toerne, C. Direct comparison of MS-based label-free and SILAC quantitative proteome profiling strategies in primary retinal Müller cells. Proteomics 12, 1902-1911 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7763&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=7763&la=de Thu, 19 Jul 2012 00:00:00 +0000 <![CDATA[Azimzadeh, O. et al. Rapid proteomic remodeling of cardiac tissue caused by total body ionizing radiation. Proteomics 11, 3299-3311 (2011)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5023&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5023&la=de Thu, 11 Aug 2011 00:00:00 +0000 <![CDATA[Holzmeister, C.F. et al. Proteomic analysis of defense response of wildtype Arabidopsis thaliana and plants with impaired NO-homeostasis. Proteomics 11, 1664-1683 (2011)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4270&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4270&la=de Thu, 15 Sep 2011 00:00:00 +0000 <![CDATA[Antonov, A.V. ; Dietmann, S. ; Rodchenkov, I. & Mewes, H.-W. PPI spider: A tool for the interpretation of proteomics data in the context of protein-protein interaction networks. Proteomics 9, 2740-2749 (2009)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=77&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=77&la=de Thu, 31 Dec 2009 00:00:00 +0000 <![CDATA[Milosevic, J.* ; Bulau, P.* ; Mortz, E.* & Eickelberg, O. Subcellular fractionation of TGF-β1-stimulated lung epithelial cells: A novel proteomic approach for identifying signaling intermediates. Proteomics 9, 1230-1240 (2009)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1497&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1497&la=de Thu, 31 Dec 2009 00:00:00 +0000 <![CDATA[Bode, M.* et al. Interlocking transcriptomics, proteomics and toponomics technologies for brain tissue analysis in murine hippocampus. Proteomics 8, 1170-1178 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3622&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3622&la=de Wed, 02 Apr 2008 00:00:00 +0000 <![CDATA[Hamacher, M.* ; Herberg, F.* ; Ueffing, M. & Meyer, H.E. Seven successful years of Omics research: The Human Brain Proteome Project within the National German Research Network (NGFN). Proteomics 8, 1116-1117 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2303&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2303&la=de Wed, 10 Dec 2008 00:00:00 +0000 <![CDATA[Hartl, D.* et al. Transcriptome and proteome analysis of early embryonic mouse brain development. Proteomics 8, 1257-1265 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2659&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2659&la=de Wed, 02 Apr 2008 00:00:00 +0000 <![CDATA[Horsch, M. et al. Systematic gene expression profiling of mouse model series reveals coexpressed genes. Proteomics 8, 1248-1256 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2658&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2658&la=de Wed, 02 Apr 2008 00:00:00 +0000 <![CDATA[Irmler, M. et al. An approach to handling and interpretation of ambiguous data in transcriptome and proteome comparisons. Proteomics 8, 1165-1169 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3621&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3621&la=de Wed, 02 Apr 2008 00:00:00 +0000 <![CDATA[Schuchhardt, J.* et al. BrainProfileDB - a platform for integration of functional genomics data. Proteomics 8, 1162-1164 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3540&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3540&la=de Wed, 02 Apr 2008 00:00:00 +0000 <![CDATA[Deeg, C.A.* et al. Down-regulation of pigment epithelium-derived factor in uveitic lesion associates with focal vascular endothelial growth factor expression and breakdown of the blood-retinal barrier. Proteomics 7, 1540-1548 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5084&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5084&la=de Wed, 30 May 2007 00:00:00 +0000 <![CDATA[Gloeckner, C.J. ; Boldt, K. ; Schumacher, A. ; Roepman, R.* & Ueffing, M. A novel tandem affinity purification strategy for the efficient isolation and characterisation of native protein complexes. Proteomics 7, 4228-4234 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3057&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3057&la=de Mon, 31 Dec 2007 00:00:00 +0000 <![CDATA[Hamacher, M.* et al. High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop. Proteomics 7, 2490-2496 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5844&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5844&la=de Mon, 03 Sep 2007 00:00:00 +0000 <![CDATA[Kiemer, L.* ; Costa, S. ; Ueffing, M. & Cesareni, G.* WI-PHI: A weighted yeast interactome enriched for direct physical interactions. Proteomics 7, 932-943 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3769&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3769&la=de Fri, 30 Mar 2007 00:00:00 +0000 <![CDATA[Blazek, E. & Meisterernst, M. A functional proteomics approach for the detection of nuclear proteins based on derepressed importin alpha. Proteomics 6, 2070-2078 (2006)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=832&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=832&la=de Mon, 30 Oct 2006 00:00:00 +0000 <![CDATA[Islinger, M.* ; Lüers, G.H.* ; Zischka, H. ; Ueffing, M. & Völkl, A.* Insights into the membrane proteome of rat liver peroxisomes: Microsomal glutathione-S-transferase is shared by both subcellular compartments. Proteomics 6, 804-816 (2006)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2176&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2176&la=de Wed, 05 Jul 2006 00:00:00 +0000 <![CDATA[Sarioglu, H. et al. Quantitative analysis of 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced proteome alterations in 5L rat hepatoma cells using isotope-coded protein lables. Proteomics 6, 2407-2421 (2006)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3285&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3285&la=de Wed, 11 Oct 2006 00:00:00 +0000 <![CDATA[Schmitt, S.* et al. Proteome analysis of mitochondrial outer membrane from Neurospora crassa. Proteomics 6, 72-80 (2006)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1913&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1913&la=de Tue, 04 Apr 2006 00:00:00 +0000 <![CDATA[Facius, A. et al. PRIME: A graphical interface for integrating genomic/proteomic databases. Proteomics 5, 76-80 (2005)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3129&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3129&la=de Thu, 01 Dec 2005 00:00:00 +0000 <![CDATA[Hauck, S.M. et al. Proteomic analysis of the porcine interphotoreceptor matrix. Proteomics 5, 3623-3636 (2005)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4478&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4478&la=de Sat, 31 Dec 2005 00:00:00 +0000 <![CDATA[Klein, C.* et al. The membrane proteome of Halobacterium salinarum. Proteomics 5, 180-197 (2005)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3799&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3799&la=de Wed, 28 Sep 2005 00:00:00 +0000 <![CDATA[Zischka, H. et al. Improved mass spectrometric identification of gel-separated hydrophobic membrane proteins after sodium dodecyl sulfate removal by ion-pair extraction. Proteomics 4, 3776-3782 (2004)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2800&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2800&la=de Mon, 06 Dec 2004 00:00:00 +0000 <![CDATA[Zischka, H. et al. Improved proteome analysis of Saccharomyces cerevisiae mitochondria by free-flow electrophoresis. Proteomics 3, 906-916 (2003)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=22437&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=22437&la=de Wed, 31 Dec 2003 00:00:00 +0000