PuSH - HMGU Publikationen https://push-zb.helmholtz-munich.de PuSH - Publikationen-Server des Helmholtz Zentrums München de-de <![CDATA[Ratajczak, F. ; Joblin, M.* ; Ringsquandl, M.* & Hildebrandt, M.* Task-driven knowledge graph filtering improves prioritizing drugs for repurposing. BMC Bioinformatics 23:84 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64516&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64516&la=de Mon, 04 Jul 2022 00:00:00 +0000 <![CDATA[Amrhein, L. & Fuchs, C. stochprofML: Stochastic profiling using maximum likelihood estimation in R. BMC Bioinformatics 22:123 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61623&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61623&la=de Tue, 18 May 2021 00:00:00 +0000 <![CDATA[Waibel, D.J.E. ; Shetab Boushehri, S. & Marr, C. InstantDL: An easy-to-use deep learning pipeline for image segmentation and classification. BMC Bioinformatics 22:103 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61458&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61458&la=de Wed, 28 Apr 2021 00:00:00 +0000 <![CDATA[Dony, L. ; He, F.* & Stumpf, M.P.H.* Parametric and non-parametric gradient matching for network inference: A comparison. BMC Bioinformatics 20:52 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55358&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55358&la=de Tue, 12 Mar 2019 00:00:00 +0000 <![CDATA[Thiel, D.* et al. Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis. BMC Bioinformatics 20:292 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56192&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56192&la=de Wed, 05 Jun 2019 00:00:00 +0000 <![CDATA[Keilwagen, J.* ; Hartung, F.* ; Paulini, M.* ; Twardziok, S.O. & Grau, J.* Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi. BMC Bioinformatics 19:189 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53588&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53588&la=de Wed, 27 Jun 2018 00:00:00 +0000 <![CDATA[Molnos, S. et al. pulver: An R package for parallel ultra-rapid p-value computation for linear regression interaction terms. BMC Bioinformatics 18:429 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52023&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52023&la=de Wed, 11 Oct 2017 00:00:00 +0000 <![CDATA[Hahn, K.R. ; Massopust, P. & Prigarin, S.M.* A new method to measure complexity in binary or weighted networks and applications to functional connectivity in the human brain. BMC Bioinformatics 17:87 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47898&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47898&la=de Wed, 17 Feb 2016 00:00:00 +0000 <![CDATA[Karapiperis, C.* et al. Brain Radiation Information Data Exchange (BRIDE): Integration of experimental data from low-dose ionising radiation research for pathway discovery. BMC Bioinformatics 17:212 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48599&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48599&la=de Wed, 18 May 2016 00:00:00 +0000 <![CDATA[Liu, Y. et al. MetICA: Independent component analysis for high-resolution mass-spectrometry based non-targeted metabolomics. BMC Bioinformatics 17:114 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48037&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48037&la=de Sun, 06 Mar 2016 00:00:00 +0000 <![CDATA[Weinhold, L.* ; Wahl, S. ; Pechlivanis, S.* ; Hoffmann, P.* & Schmid, M.* A statistical model for the analysis of beta values in DNA methylation studies. BMC Bioinformatics 17:480 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50055&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50055&la=de Sat, 31 Dec 2016 00:00:00 +0000 <![CDATA[Kristensen, D.M.* ; Saeed, U. ; Frishman, D. & Koonin, E.V.* A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea. BMC Bioinformatics 16:380 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47346&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47346&la=de Sun, 22 Nov 2015 00:00:00 +0000 <![CDATA[Feigelman, J. ; Theis, F.J. & Marr, C. MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data. BMC Bioinformatics 15:240 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31757&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31757&la=de Mon, 14 Jul 2014 00:00:00 +0000 <![CDATA[Wahl, S. et al. On the potential of models for location and scale for genome-wide DNA methylation data. BMC Bioinformatics 15:232 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31842&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31842&la=de Wed, 30 Jul 2014 00:00:00 +0000 <![CDATA[Buggenthin, F. et al. An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy. BMC Bioinformatics 14:297 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27970&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27970&la=de Mon, 28 Oct 2013 00:00:00 +0000 <![CDATA[Hock, S. ; Hasenauer, J. & Theis, F.J. Modeling of 2D diffusion processes based on microscopy data: Parameter estimation and practical identifiability analysis. BMC Bioinformatics 14:S7 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27731&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27731&la=de Fri, 04 Oct 2013 00:00:00 +0000 <![CDATA[Vehlow, C.* et al. iVUN: Interactive Visualization of Uncertain biochemical reaction Networks. BMC Bioinformatics 14:S2 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28843&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28843&la=de Thu, 09 Jan 2014 00:00:00 +0000 <![CDATA[Petersen, A.-K. et al. On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies. BMC Bioinformatics 13:120 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10478&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10478&la=de Fri, 19 Oct 2012 00:00:00 +0000 <![CDATA[van Wieringen, W.N.* et al. Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses. BMC Bioinformatics 13:80 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10893&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10893&la=de Thu, 15 Nov 2012 00:00:00 +0000 <![CDATA[Forer, L.* et al. CONAN: Copy number variation analysis software for genome-wide association studies. BMC Bioinformatics 11:318 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2040&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2040&la=de Thu, 09 Sep 2010 00:00:00 +0000 <![CDATA[Hartsperger, M.L. ; Blöchl, F. ; Stuempflen, V. & Theis, F.J. Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs. BMC Bioinformatics 11:522 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4678&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4678&la=de Fri, 31 Dec 2010 00:00:00 +0000 <![CDATA[Kowarsch, A. et al. Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation. BMC Bioinformatics 11:585 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1801&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=1801&la=de Fri, 31 Dec 2010 00:00:00 +0000 <![CDATA[Krumsiek, J. ; Pölsterl, S. ; Wittmann, D.M. & Theis, F.J. Odefy - from discrete to continuous models. BMC Bioinformatics 11, 1-10:233 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3037&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3037&la=de Fri, 31 Dec 2010 00:00:00 +0000 <![CDATA[Sturm, M. ; Hackenberg, M.* ; Langenberger, D.* & Frishman, D. TargetSpy: A supervised machine learning approach for microRNA target prediction. BMC Bioinformatics 11:292 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2946&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2946&la=de Fri, 31 Dec 2010 00:00:00 +0000 <![CDATA[Hao, P.* et al. Human gene expression sensitivity according to large scale meta-analysis. BMC Bioinformatics 10, Suppl.1:S56 (2009)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=82&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=82&la=de Thu, 10 Sep 2009 00:00:00 +0000 <![CDATA[Maier, H. et al. MausDB: An open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects. BMC Bioinformatics 9:169 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2006&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2006&la=de Mon, 26 May 2008 00:00:00 +0000 <![CDATA[Artamonova, I.I. ; Frishman, G. & Frishman, D. Applying negative rule mining to improve genome annotation. BMC Bioinformatics 8:261 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4144&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4144&la=de Mon, 17 Dec 2007 00:00:00 +0000 <![CDATA[Klee, K. ; Ernst, R. ; Spannagl, M. & Mayer, K.F.X. Apollo2Go: A web service adapter for the Apollo genome viewer to enable distributed genome annotation. BMC Bioinformatics 8:320 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5477&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5477&la=de Tue, 30 Oct 2007 00:00:00 +0000 <![CDATA[Neverov, A.D.* et al. Alternative splicing and protein function. BMC Bioinformatics 6:266 (2005)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5526&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5526&la=de Sat, 31 Dec 2005 00:00:00 +0000 <![CDATA[Tetko, I.V. ; Facius, A. ; Ruepp, A. & Mewes, H.-W. Super paramagnetic clustering of protein sequences. BMC Bioinformatics 6:82 (2005)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5525&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5525&la=de Sat, 31 Dec 2005 00:00:00 +0000 <![CDATA[Wjst, M. Target SNP selection in complex disease association studies. BMC Bioinformatics 5:92 (2004)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4632&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4632&la=de Fri, 31 Dec 2004 00:00:00 +0000