PuSH - HMGU Publikationen https://push-zb.helmholtz-munich.de PuSH - Publikationen-Server des Helmholtz Zentrums München de-de <![CDATA[Siani, R. ; Gutjahr, C.* & Schloter, M. Adaptation to a host-associated lifestyle is associated with convergent loss of flagella-related genes in Pseudomonadota. BMC Genomics 27:366 (2026)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=77525&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=77525&la=de Tue, 12 May 2026 00:00:00 +0000 <![CDATA[Hrovatin, K. et al. Integrating single-cell RNA-seq datasets with substantial batch effects. BMC Genomics 26:974 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75927&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75927&la=de Mon, 03 Nov 2025 00:00:00 +0000 <![CDATA[Vo, P.* et al. Systematic ocular phenotyping of 8,707 knockout mouse lines identifies genes associated with abnormal corneal phenotypes. BMC Genomics 26:48 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=73128&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=73128&la=de Mon, 17 Mar 2025 00:00:00 +0000 <![CDATA[Buerstmayr, M.* et al. Fusarium head blight resistance in European winter wheat: Insights from genome-wide transcriptome analysis. BMC Genomics 22:470 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62391&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62391&la=de Fri, 23 Jul 2021 00:00:00 +0000 <![CDATA[Monroy Kuhn, J.M. ; Meusemann, K.* & Korb, J.* Disentangling the aging gene expression network of termite queens. BMC Genomics 22:339 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62039&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62039&la=de Mon, 21 Jun 2021 00:00:00 +0000 <![CDATA[Velluva, A.* et al. Phenotype-tissue expression and exploration (PTEE) resource facilitates the choice of tissue for RNA-seq-based clinical genetics studies. BMC Genomics 22:802 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63507&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63507&la=de Mon, 20 Dec 2021 00:00:00 +0000 <![CDATA[Drozdova, P.* et al. Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods. BMC Genomics 20:712 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56906&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56906&la=de Wed, 02 Oct 2019 00:00:00 +0000 <![CDATA[Higareda-Almaraz, J. et al. Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes. BMC Genomics 19:794 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54737&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54737&la=de Wed, 28 Nov 2018 00:00:00 +0000 <![CDATA[Taudt, A.* et al. METHimpute: Imputation-guided construction of complete methylomes from WGBS data. BMC Genomics 19:444 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53764&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53764&la=de Mon, 09 Jul 2018 00:00:00 +0000 <![CDATA[Trümbach, D. et al. ENCoRE: An efficient software for CRISPR screens identifies new players in extrinsic apoptosis. BMC Genomics 18:905 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52410&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52410&la=de Tue, 28 Nov 2017 00:00:00 +0000 <![CDATA[Wilson, R. et al. The dynamics of smoking-related disturbed methylation: A two time-point study of methylation change in smokers, non-smokers and former smokers. BMC Genomics 18:805 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52214&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52214&la=de Wed, 08 Nov 2017 00:00:00 +0000 <![CDATA[Zuber, V.* et al. Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer. BMC Genomics 18:270 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50910&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50910&la=de Fri, 28 Apr 2017 00:00:00 +0000 <![CDATA[Köferle, A.* et al. CORALINA: A universal method for the generation of gRNA libraries for CRISPR-based screening. BMC Genomics 17:917 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49962&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49962&la=de Tue, 22 Nov 2016 00:00:00 +0000 <![CDATA[Kugler, K.G. et al. Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin. BMC Genomics 17:417 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48720&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48720&la=de Mon, 06 Jun 2016 00:00:00 +0000 <![CDATA[Penselin, D.* et al. Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses. BMC Genomics 17:953 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50169&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50169&la=de Sat, 31 Dec 2016 00:00:00 +0000 <![CDATA[Schlegel, M.* et al. Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles. BMC Genomics 17:1015 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50151&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50151&la=de Sat, 31 Dec 2016 00:00:00 +0000 <![CDATA[Trung, N.T.* ; Kremmer, E. & Mittler, G.* Biochemical and cellular characterization of transcription factors binding to the hyperconserved core promoter-associated M4 motif. BMC Genomics 17:693 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49446&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49446&la=de Fri, 23 Sep 2016 00:00:00 +0000 <![CDATA[Czaban, A.* et al. Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation. BMC Genomics 16:249 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44389&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44389&la=de Thu, 16 Apr 2015 00:00:00 +0000 <![CDATA[Derdak, S.* et al. Genomic characterization of mutant laboratory mouse strains by exome sequencing and annotation lift-over. BMC Genomics 16:351 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44818&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44818&la=de Tue, 12 May 2015 00:00:00 +0000 <![CDATA[Mertes, F. et al. Combined ultra-low input mRNA and whole-genome sequencing of human embryonic stem cells. BMC Genomics 16:925 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47347&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47347&la=de Sun, 22 Nov 2015 00:00:00 +0000 <![CDATA[Ni, G.* et al. Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken. BMC Genomics 16:824 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47183&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47183&la=de Thu, 05 Nov 2015 00:00:00 +0000 <![CDATA[Summerer, I. et al. Integrative analysis of the microRNA-mRNA response to radiochemotherapy in primary head and neck squamous cell carcinoma cells. BMC Genomics 16:654 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=46727&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=46727&la=de Sat, 05 Sep 2015 00:00:00 +0000 <![CDATA[Weinmaier, T.* et al. Genomic factors related to tissue tropism in Chlamydia pneumoniae infection. BMC Genomics 16:268 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44437&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44437&la=de Mon, 20 Apr 2015 00:00:00 +0000 <![CDATA[Almouzni, G.* et al. Relationship between genome and epigenome - challenges and requirements for future research. BMC Genomics 15:487 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31675&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31675&la=de Thu, 26 Jun 2014 00:00:00 +0000 <![CDATA[Backes, C.* et al. Systematic permutation testing in GWAS pathway analyses: Identification of genetic networks in dilated cardiomyopathy and ulcerative colitis. BMC Genomics 15:622 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=32359&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=32359&la=de Wed, 24 Sep 2014 00:00:00 +0000 <![CDATA[Mathew, L. S.* et al. A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms. BMC Genomics 15:285 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31239&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31239&la=de Fri, 09 May 2014 00:00:00 +0000 <![CDATA[Tang, H.* et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics 15:312 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31357&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=31357&la=de Sat, 24 May 2014 00:00:00 +0000 <![CDATA[Unterseer, S.* et al. A powerful tool for genome analysis in maize: Development and evaluation of the high density 600k SNP genotyping array. BMC Genomics 15:823 (2014)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=32476&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=32476&la=de Tue, 07 Oct 2014 00:00:00 +0000 <![CDATA[Dharuri, H.* et al. Automated wokflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles. BMC Genomics 14:865 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28630&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28630&la=de Wed, 11 Dec 2013 00:00:00 +0000 <![CDATA[Jansen, S.* et al. Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage. BMC Genomics 14:446 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=26555&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=26555&la=de Fri, 09 Aug 2013 00:00:00 +0000 <![CDATA[Kersten, B.* et al. Integrated transcriptomics and metabolomics decipher differences in the resistance of pedunculate oak to the herbivore Tortrix viridana L. BMC Genomics 14:737 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27978&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27978&la=de Tue, 29 Oct 2013 00:00:00 +0000 <![CDATA[Kranis, A.* et al. Development of a high density 600K SNP genotyping array for chicken. BMC Genomics 14:59 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=23658&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=23658&la=de Thu, 04 Apr 2013 00:00:00 +0000 <![CDATA[Kugler, K.G. et al. Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.). BMC Genomics 14:728 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28487&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28487&la=de Wed, 27 Nov 2013 00:00:00 +0000 <![CDATA[Livaja, M.* et al. BSTA: A targeted approach combines bulked segregant analysis with next-generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower. BMC Genomics 14:628 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27797&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=27797&la=de Thu, 17 Oct 2013 00:00:00 +0000 <![CDATA[Widmann, P.* et al. A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle. BMC Genomics 14:798 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28928&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=28928&la=de Tue, 31 Dec 2013 00:00:00 +0000 <![CDATA[Arnold, M. et al. Network-based SNP meta-analysis identifies joint and disjoint genetic features across common human diseases. BMC Genomics 13:490 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10694&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10694&la=de Wed, 31 Oct 2012 00:00:00 +0000 <![CDATA[Studer, B.* et al. A transcriptome map of perennial ryegrass (Lolium perenne L.). BMC Genomics 13:140 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10474&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10474&la=de Thu, 18 Oct 2012 00:00:00 +0000 <![CDATA[Lorenz, P.* et al. The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues. BMC Genomics 11:206 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2945&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2945&la=de Fri, 31 Dec 2010 00:00:00 +0000 <![CDATA[Lutter, D. ; Marr, C. ; Krumsiek, J. ; Lang, E.W.* & Theis, F.J. Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects. BMC Genomics 11:224 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6134&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6134&la=de Fri, 31 Dec 2010 00:00:00 +0000 <![CDATA[Tsolakidou, A.* et al. Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including amyloid beta precursor protein. BMC Genomics 11:546 (2010)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6068&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6068&la=de Wed, 08 Dec 2010 00:00:00 +0000 <![CDATA[Steuernagel, B.* et al. De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley. BMC Genomics 10:547 (2009)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=847&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=847&la=de Thu, 31 Dec 2009 00:00:00 +0000 <![CDATA[Wang, X.* ; Haberer, G.* & Mayer, K.F.X.* Discovery of cis-elements between sorghum and rice using co-expression and evolutionary conservation. BMC Genomics 10:284 (2009)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=311&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=311&la=de Thu, 31 Dec 2009 00:00:00 +0000 <![CDATA[Flockerzi, A.* et al. Expression patterns of transcribed human endogenous retrovirus HERV-K(HML-2) loci in human tissues and the need for a HERV Transcriptome Project. BMC Genomics 9:354 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2209&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2209&la=de Tue, 21 Oct 2008 00:00:00 +0000 <![CDATA[Ishihama, Y.* et al. Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9:102 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3433&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3433&la=de Thu, 18 Sep 2008 00:00:00 +0000 <![CDATA[Prinzen, C.* et al. Differential gene expression in ADAM10 and mutant ADAM10 transgenic mice. BMC Genomics 10:66 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=345&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=345&la=de Thu, 09 Jul 2009 00:00:00 +0000 <![CDATA[Tamplin, O.J.* et al. Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. BMC Genomics 9:511 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5202&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5202&la=de Wed, 31 Dec 2008 00:00:00 +0000 <![CDATA[Wong, P. et al. An evolutionary and structural characterization of mammalian protein complex organization. BMC Genomics 9:629 (2008)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2388&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=2388&la=de Wed, 31 Dec 2008 00:00:00 +0000 <![CDATA[Ballvora, A.* et al. Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics 8:112 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4264&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4264&la=de Fri, 21 Sep 2007 00:00:00 +0000 <![CDATA[Datson, N.A.* et al. Development of the first marmoset-specific DNA microarray (EUMAMA): A new genetic tool for large-scale expression profiling in a non-human primate. BMC Genomics 8:190 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5881&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5881&la=de Fri, 21 Sep 2007 00:00:00 +0000 <![CDATA[Mägi, R.* et al. Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation. BMC Genomics 8:159 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3925&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=3925&la=de Fri, 09 Nov 2007 00:00:00 +0000 <![CDATA[Münsterkötter, M. & Steinberg, G.* The fungus Ustilago maydis and humans share disease-related proteins that are not found in Saccharomyces cerevisiae. BMC Genomics 8:473 (2007)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4277&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=4277&la=de Mon, 11 Feb 2008 00:00:00 +0000 <![CDATA[Engelbrecht, C.C. ; Schoof, H. & Böhm, S.* Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics 5:39 (2004)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=400&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=400&la=de Mon, 29 Nov 2004 00:00:00 +0000 <![CDATA[Wahl, M.B.* et al. Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line. BMC Genomics 5:98 (2004)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5211&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=5211&la=de Fri, 31 Dec 2004 00:00:00 +0000