PuSH - HMGU Publikationen https://push-zb.helmholtz-munich.de PuSH - Publikationen-Server des Helmholtz Zentrums München de-de <![CDATA[Horvath, P. & Coscia, F.* Spatial proteomics in translational and clinical research. Mol. Syst. Biol. 21, 526 - 530 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=74095&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=74095&la=de Sat, 10 May 2025 00:00:00 +0000 <![CDATA[Pietzner, M.* et al. Machine learning-guided deconvolution of plasma protein levels. Mol. Syst. Biol., DOI: 10.1038/s44320-025-00158-6 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75747&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75747&la=de Thu, 23 Oct 2025 00:00:00 +0000 <![CDATA[Stock, M. et al. Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data. Mol. Syst. Biol. 21, 214-230 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=73382&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=73382&la=de Tue, 08 Apr 2025 00:00:00 +0000 <![CDATA[Lobentanzer, S.* ; Rodriguez-Mier, P.* ; Bauer, S. & Saez-Rodriguez, J.* Molecular causality in the advent of foundation models. Mol. Syst. Biol., DOI: 10.1038/s44320-024-00041-w (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70868&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70868&la=de Thu, 20 Jun 2024 00:00:00 +0000 <![CDATA[Mitic, N.* et al. Dissecting the spatiotemporal diversity of adult neural stem cells. Mol. Syst. Biol. 20, 321-337 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=69974&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=69974&la=de Mon, 22 Apr 2024 00:00:00 +0000 <![CDATA[Tomaz da Silva, P.* et al. Cellular energy regulates mRNA degradation in a codon-specific manner. Mol. Syst. Biol. 20, 506-520 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70238&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70238&la=de Tue, 07 May 2024 00:00:00 +0000 <![CDATA[Lotfollahi, M. et al. Predicting cellular responses to complex perturbations in high-throughput screens. Mol. Syst. Biol. 19:e11517 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67764&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67764&la=de Fri, 06 Oct 2023 00:00:00 +0000 <![CDATA[Polychronidou, M.* et al. Single-cell biology: What does the future hold? Mol. Syst. Biol. 19:e11799 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68476&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68476&la=de Wed, 18 Oct 2023 00:00:00 +0000 <![CDATA[Thielert, M.* et al. Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel. Mol. Syst. Biol. 19:e11503 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67980&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67980&la=de Fri, 06 Oct 2023 00:00:00 +0000 <![CDATA[Urban, L. et al. Real-time genomics for One Health. Mol. Syst. Biol. 19:e11686 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68515&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68515&la=de Wed, 18 Oct 2023 00:00:00 +0000 <![CDATA[Brunner, A.D.* et al. Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation. Mol. Syst. Biol. 18:e10798 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64499&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64499&la=de Wed, 04 May 2022 00:00:00 +0000 <![CDATA[Hersbach, B.A. et al. Probing cell identity hierarchies by fate titration and collision during direct reprogramming. Mol. Syst. Biol. 18:e11129 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=66226&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=66226&la=de Tue, 08 Nov 2022 00:00:00 +0000 <![CDATA[Ibarra Del Rio, I.A. et al. Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements. Mol. Syst. Biol. 18:e10473 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=65949&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=65949&la=de Mon, 14 Nov 2022 00:00:00 +0000 <![CDATA[Bergen, V. ; Soldatov, R.A.* ; Kharchenko, P.V.* & Theis, F.J. RNA velocity-current challenges and future perspectives. Mol. Syst. Biol. 17:e10282 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62876&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62876&la=de Mon, 04 Oct 2021 00:00:00 +0000 <![CDATA[Molbay, M. ; Kolabas, Z.I. ; Todorov, M.I. ; Ohn, T.-L. & Ertürk, A. A guidebook for DISCO tissue clearing. Mol. Syst. Biol. 17:e9807 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61681&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61681&la=de Thu, 20 May 2021 00:00:00 +0000 <![CDATA[Ostaszewski, M.* et al. COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. Mol. Syst. Biol. 17:e10387 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63392&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63392&la=de Thu, 02 Dec 2021 00:00:00 +0000 <![CDATA[Ostaszewski, M.* et al. COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021). Mol. Syst. Biol. 17:e10851 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63941&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63941&la=de Mon, 23 May 2022 00:00:00 +0000 <![CDATA[Türei, D.* et al. Integrated intra- and intercellular signaling knowledge for multicellular omics analysis. Mol. Syst. Biol. 17:e9923 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61700&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61700&la=de Fri, 21 May 2021 00:00:00 +0000 <![CDATA[Fischer, D.S. ; Wu, Y. ; Schubert, B. & Theis, F.J. Predicting antigen specificity of single T cells based on TCR CDR3 regions. Mol. Syst. Biol. 16:e9416 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=59895&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=59895&la=de Fri, 16 Oct 2020 00:00:00 +0000 <![CDATA[Eraslan, B.* et al. Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues. Mol. Syst. Biol. 15:e8513 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55577&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55577&la=de Tue, 19 Mar 2019 00:00:00 +0000 <![CDATA[Luecken, M. & Theis, F.J. Current best practices in single-cell RNA-seq analysis: A tutorial. Mol. Syst. Biol. 15:e8746 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56374&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56374&la=de Thu, 27 Jun 2019 00:00:00 +0000 <![CDATA[Niu, L.* et al. Plasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease. Mol. Syst. Biol. 15:e8793 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55606&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55606&la=de Thu, 21 Mar 2019 00:00:00 +0000 <![CDATA[Argelaguet, R.* et al. Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets. Mol. Syst. Biol. 14:e8124 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53911&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53911&la=de Mon, 16 Jul 2018 00:00:00 +0000 <![CDATA[Griffiths, J.A.* ; Scialdone, A. & Marioni, J.C.* Using single-cell genomics to understand developmental processes and cell fate decisions. Mol. Syst. Biol. 14:e8046 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53823&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53823&la=de Thu, 12 Jul 2018 00:00:00 +0000 <![CDATA[Schiller, H. B.* et al. Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair. Mol. Syst. Biol. 11:819 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=46367&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=46367&la=de Fri, 17 Jul 2015 00:00:00 +0000 <![CDATA[Iskar, M.* et al. Characterization of drug-induced transcriptional modules: Towards drug repositioning and functional understanding. Mol. Syst. Biol. 9:662 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=24226&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=24226&la=de Thu, 02 May 2013 00:00:00 +0000 <![CDATA[Kuhn, M.* et al. Systematic identification of proteins that elicit drug side effects. Mol. Syst. Biol. 9:663 (2013)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=25584&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=25584&la=de Mon, 08 Jul 2013 00:00:00 +0000 <![CDATA[Wang-Sattler, R. et al. Novel biomarkers for pre-diabetes identified by metabolomics. Mol. Syst. Biol. 8:615 (2012)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10426&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10426&la=de Mon, 08 Oct 2012 00:00:00 +0000 <![CDATA[Kiel, C.* et al. Structural and functional protein network analyses predict novel signaling functions for rhodopsin. Mol. Syst. Biol. 7:551 (2011)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6679&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=6679&la=de Tue, 06 Dec 2011 00:00:00 +0000