PuSH - HMGU Publikationen https://push-zb.helmholtz-munich.de PuSH - Publikationen-Server des Helmholtz Zentrums München de-de <![CDATA[An, Y. et al. TransFactor-Prediction of pro-viral SARS-CoV-2 host factors using a protein language model. Bioinformatics 41:btaf491 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75536&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75536&la=de Tue, 04 Nov 2025 00:00:00 +0000 <![CDATA[Hingerl, J.C.* ; Karollus, A.* & Gagneur, J. Flashzoi: An enhanced Borzoi for accelerated genomic analysis. Bioinformatics 41:btaf467 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75462&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75462&la=de Thu, 13 Nov 2025 00:00:00 +0000 <![CDATA[Klaproth-Andrade, D.* et al. PROTRIDER: Protein abundance outlier detection from mass spectrometry-based proteomics data with a conditional autoencoder. Bioinformatics 41:btaf628 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76085&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76085&la=de Tue, 25 Nov 2025 00:00:00 +0000 <![CDATA[Lucarelli, D. et al. QuiCAT: A scalable and flexible framework for mapping synthetic sequences. Bioinformatics 41:btaf607 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75985&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75985&la=de Wed, 12 Nov 2025 00:00:00 +0000 <![CDATA[Ouologuem, S. et al. Spatial transcriptomics deconvolution methods generalize well to spatial chromatin accessibility data. Bioinformatics 41, i314-i322 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75143&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=75143&la=de Tue, 22 Jul 2025 00:00:00 +0000 <![CDATA[Ali, M. et al. GraphCompass: Spatial metrics for differential analyses of cell organization across conditions. Bioinformatics 40, i548-i557 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70944&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70944&la=de Tue, 23 Jul 2024 00:00:00 +0000 <![CDATA[Astaburuaga-García, R.* et al. RUCova: Removal of unwanted covariance in mass cytometry data. Bioinformatics 40:btae669 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=72500&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=72500&la=de Mon, 02 Dec 2024 00:00:00 +0000 <![CDATA[Dorešić, D. ; Grein, S.* & Hasenauer, J. Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data. Bioinformatics 40, i558-i566 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70943&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70943&la=de Tue, 23 Jul 2024 00:00:00 +0000 <![CDATA[Hagenberg, J. et al. longmixr: A tool for robust clustering of high-dimensional cross-sectional and longitudinal variables of mixed data types. Bioinformatics 40:btae137 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70247&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70247&la=de Tue, 07 May 2024 00:00:00 +0000 <![CDATA[Heumos, S.* et al. Cluster-efficient pangenome graph construction with nf-core/pangenome. Bioinformatics 40:btae609 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=72002&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=72002&la=de Mon, 11 Nov 2024 00:00:00 +0000 <![CDATA[Stock, M. ; Popp, N. ; Fiorentino, J. & Scialdone, A. Topological benchmarking of algorithms to infer Gene Regulatory Networks from Single-Cell RNA-seq Data. Bioinformatics 40:btae267 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70543&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70543&la=de Fri, 07 Jun 2024 00:00:00 +0000 <![CDATA[Wang, J.* ; Horlacher, M. ; Cheng, L.* & Winther, O.* DeepLocRNA: An interpretable deep learning model for predicting RNA subcellular localisation with domain-specific transfer-learning. Bioinformatics 40:btae065 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=69880&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=69880&la=de Tue, 06 Feb 2024 00:00:00 +0000 <![CDATA[Alamoudi, E.* et al. FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes. Bioinformatics 39:btad674 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68760&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68760&la=de Tue, 28 Nov 2023 00:00:00 +0000 <![CDATA[Hecker, D.* ; Behjati Ardakani, F.* ; Karollus, A.* ; Gagneur, J. & Schulz, M.H.* The adapted activity-by-contact model for enhancer-gene assignment and its application to single-cell data. Bioinformatics 39:btad062 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67338&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67338&la=de Wed, 01 Feb 2023 00:00:00 +0000 <![CDATA[Heumos, L. et al. mlf-core: A framework for deterministic machine learning. Bioinformatics 39:8 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67638&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67638&la=de Fri, 06 Oct 2023 00:00:00 +0000 <![CDATA[Huth, M. et al. Accessibility of covariance information creates vulnerability in Federated Learning frameworks. Bioinformatics 39:9 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68617&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68617&la=de Tue, 28 Nov 2023 00:00:00 +0000 <![CDATA[Kardell, O. ; Breimann, S.* & Hauck, S.M. mpwR: An R package for comparing performance of mass spectrometry-based proteomic workflows. Bioinformatics 39:3 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67858&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67858&la=de Fri, 06 Oct 2023 00:00:00 +0000 <![CDATA[Schälte, Y. et al. pyPESTO: A modular and scalable tool for parameter estimation for dynamic models. Bioinformatics 39:btad711 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68911&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68911&la=de Tue, 19 Dec 2023 00:00:00 +0000 <![CDATA[Vilov, S. & Heinig, M. DeepSom: A CNN-based approach to somatic variant calling in WGS samples without a matched normal. Bioinformatics 39:9 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67203&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67203&la=de Tue, 17 Jan 2023 00:00:00 +0000 <![CDATA[Weidner, L. ; Hemmler, D. ; Rychlik, M.* & Schmitt-Kopplin, P. DBDIpy: A Python library for processing of untargeted datasets from real-time plasma ionization mass spectrometry. Bioinformatics 39:2 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67477&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67477&la=de Thu, 23 Feb 2023 00:00:00 +0000 <![CDATA[Yuzeir, A.* et al. IntestLine: A shiny-based application to map the rolled intestinal tissue onto a line. Bioinformatics 39:2 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67705&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67705&la=de Fri, 06 Oct 2023 00:00:00 +0000 <![CDATA[Chetnik, K.* et al. maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines. Bioinformatics 38, 1168-1170 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63448&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=63448&la=de Thu, 16 Dec 2021 00:00:00 +0000 <![CDATA[Habermann, D.* et al. HAMdetector: A Bayesian regression model that integrates information to detect HLA-associated mutations. Bioinformatics 38, 2428-2436 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64525&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64525&la=de Mon, 04 Jul 2022 00:00:00 +0000 <![CDATA[Ogris, C. ; Castresana-Aguirre, M.* & Sonnhammer, E.L.L.* PathwAX II: Network-based pathway analysis with interactive visualization of network crosstalk. Bioinformatics 38, 2659-2660 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64653&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=64653&la=de Tue, 19 Jul 2022 00:00:00 +0000 <![CDATA[Salzer, L. ; Witting, M. & Schmitt-Kopplin, P. MobilityTransformR: An R package for effective mobility transformation of CE-MS data. Bioinformatics 38, 4044-4045 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=65669&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=65669&la=de Wed, 02 Nov 2022 00:00:00 +0000 <![CDATA[Fröhlich, F.* et al. AMICI: High-performance sensitivity analysis for large ordinary differential equation models. Bioinformatics 37, 3676-3677 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61728&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61728&la=de Tue, 25 May 2021 00:00:00 +0000 <![CDATA[Schmiester, L. ; Weindl, D. & Hasenauer, J. Efficient gradient-based parameter estimation for dynamic models using qualitative data. Bioinformatics 37, 4493-4500 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62577&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62577&la=de Wed, 04 Aug 2021 00:00:00 +0000 <![CDATA[Angerer, P. ; Fischer, D.S. ; Theis, F.J. ; Scialdone, A. & Marr, C. Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data. Bioinformatics 36, 4291-4295 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=58678&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=58678&la=de Thu, 02 Apr 2020 00:00:00 +0000 <![CDATA[Dorigatti, E. & Schubert, B. Joint epitope selection and spacer design for string-of-beads vaccines. Bioinformatics 36, 2, i643-i650 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60958&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60958&la=de Tue, 12 Jan 2021 00:00:00 +0000 <![CDATA[Haselimashhadi, H.* et al. Soft windowing application to improve analysis of high-throughput phenotyping data. Bioinformatics 36, 1492-1500 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=57037&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=57037&la=de Mon, 14 Oct 2019 00:00:00 +0000 <![CDATA[Lotfollahi, M. ; Naghipourfar, M. ; Theis, F.J. & Wolf, F.A. Conditional out-of-distribution generation for unpaired data using transfer VAE. Bioinformatics 36, 2, i610-i617 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60957&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60957&la=de Tue, 12 Jan 2021 00:00:00 +0000 <![CDATA[Porubsky, D.* et al. breakpointR: An R/Bioconductor package to localize strand state changes in Strand-seq data. Bioinformatics 36, 1260-1261 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=57811&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=57811&la=de Mon, 13 Jan 2020 00:00:00 +0000 <![CDATA[Schälte, Y. & Hasenauer, J. Efficient exact inference for dynamical systems with noisy measurements using sequential approximate Bayesian computation. Bioinformatics 36, 1, 551-559 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=59641&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=59641&la=de Mon, 20 Jul 2020 00:00:00 +0000 <![CDATA[Schmiester, L. ; Schälte, Y. ; Fröhlich, F. ; Hasenauer, J. & Weindl, D. Efficient parameterization of large-scale dynamic models based on relative measurements. Bioinformatics 36, 594-602 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56651&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56651&la=de Wed, 07 Aug 2019 00:00:00 +0000 <![CDATA[Solovey, M. & Scialdone, A. COMUNET: A tool to explore and visualize intercellular communication. Bioinformatics 36, 4296-4300 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=59100&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=59100&la=de Mon, 18 May 2020 00:00:00 +0000 <![CDATA[Do, K.T. ; Rasp, D.J.N.P. ; Kastenmüller, G. ; Suhre, K. & Krumsiek, J. MoDentify: Phenotype-driven module identification in metabolomics networks at different resolutions. Bioinformatics 35, 532-534 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53974&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53974&la=de Tue, 24 Jul 2018 00:00:00 +0000 <![CDATA[Gilly, A. et al. Very low-depth whole-genome sequencing in complex trait association studies. Bioinformatics 35, 2555-2561 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56392&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56392&la=de Tue, 25 Jun 2019 00:00:00 +0000 <![CDATA[Hamad, S. et al. HitPickV2: A web server to predict targets of chemical compounds. Bioinformatics 35, 1239-1240 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54213&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54213&la=de Wed, 19 Sep 2018 00:00:00 +0000 <![CDATA[Hass, H.* et al. Benchmark problems for dynamic modeling of intracellular processes. Bioinformatics 35, 3073-3082 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55661&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55661&la=de Thu, 14 Mar 2019 00:00:00 +0000 <![CDATA[Jeske, T. et al. DEUS: An R package for accurate small RNA profiling based on differential expression of unique sequences. Bioinformatics 35, 4834-4836 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56385&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=56385&la=de Mon, 24 Jun 2019 00:00:00 +0000 <![CDATA[Villaverde, A.F.* ; Fröhlich, F. ; Weindl, D. ; Hasenauer, J. & Banga, J.R.* Benchmarking optimization methods for parameter estimation in large kinetic models. Bioinformatics 35, 830-838 (2019)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55598&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=55598&la=de Tue, 19 Mar 2019 00:00:00 +0000 <![CDATA[Ballnus, B. ; Schaper, S.* ; Theis, F.J. & Hasenauer, J. Bayesian parameter estimation for biochemical reaction networks using region-based adaptive parallel tempering. Bioinformatics 34, 494-501 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54057&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54057&la=de Fri, 03 Aug 2018 00:00:00 +0000 <![CDATA[Klinger, E. ; Rickert, D. & Hasenauer, J. pyABC: Distributed, likelihood-free inference. Bioinformatics 34, 3591-3593 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53523&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53523&la=de Tue, 26 Jun 2018 00:00:00 +0000 <![CDATA[Loos, C. ; Krause, S. & Hasenauer, J. Hierarchical optimization for the efficient parametrization of ODE models. Bioinformatics 34, 4266-4273 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53953&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53953&la=de Wed, 18 Jul 2018 00:00:00 +0000 <![CDATA[Stapor, P. et al. PESTO: Parameter EStimation TOolbox. Bioinformatics 34, 705-707 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52221&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52221&la=de Mon, 13 Nov 2017 00:00:00 +0000 <![CDATA[Stapor, P. ; Fröhlich, F. & Hasenauer, J. Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis. Bioinformatics 34, 151-159 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54056&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54056&la=de Fri, 03 Aug 2018 00:00:00 +0000 <![CDATA[Chlis, N.-K. ; Wolf, F.A. & Theis, F.J. Model-based branching point detection in single-cell data by K-Branches clustering. Bioinformatics 33, 3211-3219 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=51246&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=51246&la=de Mon, 26 Jun 2017 00:00:00 +0000 <![CDATA[Dirmeier, S.* ; Fuchs, C. ; Müller, N.S. & Theis, F.J. netReg: Network-regularized linear models for biological association studies. Bioinformatics 34, 896-898 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52229&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52229&la=de Mon, 13 Nov 2017 00:00:00 +0000 <![CDATA[Fröhlich, F. ; Theis, F.J. ; Rädler, J.O.* & Hasenauer, J. Parameter estimation for dynamical systems with discrete events and logical operations. Bioinformatics 33, 1049-1056 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50367&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50367&la=de Sat, 31 Dec 2016 00:00:00 +0000 <![CDATA[Hastreiter, M. et al. KNIME4NGS: A comprehensive toolbox for next generation sequencing analysis. Bioinformatics 33, 1565-1567 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50655&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50655&la=de Fri, 02 Jun 2017 00:00:00 +0000 <![CDATA[Hilsenbeck, O.* et al. fastER: A user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy. Bioinformatics 33, 2020-2028 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50733&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50733&la=de Mon, 20 Mar 2017 00:00:00 +0000 <![CDATA[Jaravine, V.* ; Raffegerst, S.* ; Schendel, D.J.* & Frishman, D. Assessment of cancer and virus antigens for cross-reactivity in human tissues. Bioinformatics 33, 104-111 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49455&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49455&la=de Tue, 13 Sep 2016 00:00:00 +0000 <![CDATA[Kazeroonian, A. ; Theis, F.J. & Hasenauer, J. A scalable moment-closure approximation for large-scale biochemical reaction networks. Bioinformatics 33, i293-i300 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=51595&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=51595&la=de Mon, 31 Jul 2017 00:00:00 +0000 <![CDATA[Ligon, T.S.* et al. GenSSI 2.0: Multi-experiment structural identifiability analysis of SBML models. Bioinformatics 34, 1421-1423 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52836&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=52836&la=de Wed, 31 Jan 2018 00:00:00 +0000 <![CDATA[Maier, C. ; Loos, C. & Hasenauer, J. Robust parameter estimation for dynamical systems from outlier-corrupted data. Bioinformatics 33, 1-8 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49864&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49864&la=de Thu, 01 Dec 2016 00:00:00 +0000 <![CDATA[Zheng, J.* et al. LD Hub: A centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis. Bioinformatics 33, 272-279 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50516&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50516&la=de Sat, 31 Dec 2016 00:00:00 +0000 <![CDATA[Angerer, P. et al. Destiny: Diffusion maps for large-scale single-cell data in R. Bioinformatics 32, 1241-1243 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47552&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47552&la=de Fri, 01 Jan 2016 00:00:00 +0000 <![CDATA[Geissen, E.M.* et al. MEMO - multi-experiment mixture model analysis of censored data. Bioinformatics 32, 2464-2472 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48516&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48516&la=de Wed, 04 May 2016 00:00:00 +0000 <![CDATA[Hross, S. & Hasenauer, J. Analysis of CFSE time-series data using division-, age- and label-structured population models. Bioinformatics 32, 2321-2329 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48539&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=48539&la=de Mon, 09 May 2016 00:00:00 +0000 <![CDATA[Arnold, M. ; Raffler, J. ; Pfeufer, A. ; Suhre, K. & Kastenmüller, G. SNiPA: An interactive, genetic variant-centered annotation browser. Bioinformatics 31, 1334-1336 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=42854&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=42854&la=de Sun, 30 Nov 2014 00:00:00 +0000 <![CDATA[Haase, K.* ; Raffegerst, S.H. ; Schendel, D.J. & Frishman, D. Expitope: A web server for epitope expression. Bioinformatics 31, 1854-1856 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=43222&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=43222&la=de Tue, 05 May 2015 00:00:00 +0000 <![CDATA[Haghverdi, L. ; Buettner, F. & Theis, F.J. Diffusion maps for high-dimensional single-cell analysis of differentiation data. Bioinformatics 31, 2989-2998 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44922&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44922&la=de Mon, 25 May 2015 00:00:00 +0000 <![CDATA[Kim, D.K.* et al. EVpedia: A community web portal for extracellular vesicles research. Bioinformatics 31, 933-939 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=42751&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=42751&la=de Fri, 14 Nov 2014 00:00:00 +0000 <![CDATA[Matos, M.R.* ; Knapp, B. & Kaderali, L.* lpNet: A linear programming approach to reconstruct signal transduction networks. Bioinformatics 31, 3231-3233 (2015)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=45057&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=45057&la=de Mon, 01 Jun 2015 00:00:00 +0000 <![CDATA[Ocone, A. ; Haghverdi, L. ; Müller, N.S. & Theis, F.J. 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Plotting haplotype-specific linkage disequilibrium patterns by extended haplotype homozygosity. Bioinformatics 19, 786-787 (2003)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10334&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=10334&la=de Wed, 31 Dec 2003 00:00:00 +0000 <![CDATA[Wong, P.* ; Kolesov, G. ; Frishman, D. & Houry, W.A.* Phylogenetic Web Profiler. Bioinformatics 19, 782-783 (2003)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=22356&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=22356&la=de Fri, 10 Oct 2003 00:00:00 +0000 <![CDATA[Burckhardt, F. MOUSE (Mitochondrial and Other Useful SEquences) a compilation of population genetic markers. 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Bioinformatics 17, 44-57 (2001)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44444&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=44444&la=de Mon, 31 Dec 2001 00:00:00 +0000 <![CDATA[Wjst, M. & Immervoll, T. An internet linkage and mutation database for the complex phenotype asthma. Bioinformatics 14, 827-828 (1998)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=20928&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=20928&la=de Thu, 31 Dec 1998 00:00:00 +0000 <![CDATA[Herrmann, G. ; Schön, A. ; Brack-Werner, R. & Werner, T. CONRAD: A method for identification of variable and conserved regions within proteins by scale-space filtering. Bioinformatics 12, 197-203 (1996)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=33228&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=33228&la=de Mon, 30 Dec 1996 00:00:00 +0000