PuSH - HMGU Publikationen https://push-zb.helmholtz-munich.de PuSH - Publikationen-Server des Helmholtz Zentrums München de-de <![CDATA[Bahrami, M. ; Richter, T. ; Schmacke, N.A. ; Egea Lavandera, A. & Theis, F.J. From modality-specific to compositional foundation models for cell biology. Cell Syst. 17:101534 (2026)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=77055&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=77055&la=de Tue, 31 Mar 2026 00:00:00 +0000 <![CDATA[Kurochkin, I.* et al. A combinatorial transcription factor screening platform for immune cell reprogramming. Cell Syst. 17:101457 (2026)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76624&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76624&la=de Fri, 06 Mar 2026 00:00:00 +0000 <![CDATA[Moffitt, J.R.* et al. What is the main bottleneck in deriving biological understanding from spatial transcriptomic profiling? Cell Syst. 16:101200 (2025)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76749&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=76749&la=de Thu, 29 Jan 2026 00:00:00 +0000 <![CDATA[Huang, Y.* ; Urban, C.* ; Hubel, P.* ; Stukalov, A.* & Pichlmair, A. Protein turnover regulation is critical for influenza A virus infection. Cell Syst. 15, 911-929 (2024)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=71929&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=71929&la=de Mon, 04 Nov 2024 00:00:00 +0000 <![CDATA[Ntini, E.* ; Budach, S.* ; Vang Ørom, U.A.* & Marsico, A. Genome-wide measurement of RNA dissociation from chromatin classifies transcripts by their dynamics and reveals rapid dissociation of enhancer lncRNAs. Cell Syst. 14, 906-922.e6 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68717&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=68717&la=de Tue, 28 Nov 2023 00:00:00 +0000 <![CDATA[Theis, F.J. et al. What do you most hope spatial molecular profiling will help us understand? Part 1. Cell Syst. 14, 423-427 (2023)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70203&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=70203&la=de Wed, 13 Mar 2024 00:00:00 +0000 <![CDATA[Boe, R.H.* ; Ayyappan, V.* ; Schuh, L. & Raj, A.* Allelic correlation is a marker of trade-offs between barriers to transmission of expression variability and signal responsiveness in genetic networks. Cell Syst. 13, 1016-1032.e6 (2022)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=66845&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=66845&la=de Thu, 08 Dec 2022 00:00:00 +0000 <![CDATA[Aliee, H. & Theis, F.J. AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution. Cell Syst. 12, 706-715.e4 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62614&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62614&la=de Mon, 02 Aug 2021 00:00:00 +0000 <![CDATA[Ji, Y. ; Lotfollahi, M. ; Wolf, F.A. & Theis, F.J. Machine learning for perturbational single-cell omics. Cell Syst. 12, 522-537 (2021)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62329&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=62329&la=de Tue, 13 Jul 2021 00:00:00 +0000 <![CDATA[Schuh, L. et al. H4K20 methylation is differently regulated by dilution and demethylation in proliferating and cell-cycle-arrested xenopus embryos. Cell Syst. 11, 653-662.e8 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60834&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60834&la=de Tue, 09 Feb 2021 00:00:00 +0000 <![CDATA[Schuh, L. et al. Gene networks with transcriptional bursting recapitulate rare transient coordinated high expression states in cancer. Cell Syst. 10, 363-378.e12 (2020)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=58895&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=58895&la=de Fri, 15 May 2020 00:00:00 +0000 <![CDATA[Fröhlich, F. et al. Efficient parameter estimation enables the prediction of drug response using a mechanistic pan-cancer pathway model. Cell Syst. 7, 567-579 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54913&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54913&la=de Thu, 13 Dec 2018 00:00:00 +0000 <![CDATA[Loos, C. ; Möller, K.* ; Fröhlich, F. ; Hucho, T.* & Hasenauer, J. A hierarchical, data-driven approach to modeling single-cell populations predicts latent causes of cell-to-cell variability. Cell Syst. 6, 593-603.e13 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53404&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53404&la=de Tue, 08 May 2018 00:00:00 +0000 <![CDATA[Martinez-Corral, R.* ; Raimundez-Alvarez, E. ; Lin, Y.* ; Elowitz, M.B.* & Garcia-Ojalvo, J.* Self-amplifying pulsatile protein dynamics without positive feedback. Cell Syst. 7, 453-462 (2018)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54520&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=54520&la=de Tue, 23 Oct 2018 00:00:00 +0000 <![CDATA[Jagiella, N. ; Rickert, D. ; Theis, F.J. & Hasenauer, J. Parallelization and high-performance computing enables automated statistical inference of multi-scale models. Cell Syst. 4, 194–206.e9 (2017)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50343&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50343&la=de Sat, 31 Dec 2016 00:00:00 +0000 <![CDATA[Blasi, T. et al. Combinatorial histone acetylation patterns are generated by motif-specific reactions. Cell Syst. 2, 49-58 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47793&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=47793&la=de Mon, 01 Feb 2016 00:00:00 +0000 <![CDATA[Carpenter, A.* et al. What is the key best practice for collaborating with a computational biologist? Cell Syst. 3, 7-11 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49294&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=49294&la=de Mon, 22 Aug 2016 00:00:00 +0000 <![CDATA[Feigelman, J. et al. Analysis of cell lineage trees by exact bayesian inference identifies negative autoregulation of nanog in mouse embryonic stem cells. Cell Syst. 3, 480-490 (2016)]]> https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50070&la=de https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=50070&la=de Mon, 12 Dec 2016 00:00:00 +0000