TY  - COMP
AU  - Cannoodt, R.*
AU  - Deconinck, L.*
AU  - Couckuyt, A.*
AU  - Markov, N.S.*
AU  - Zappia, L.
AU  - Luecken, M.
AU  - Interlandi, M.*
AU  - Saeys, Y.*
AU  - Saelens, W.*
C1  - 74722
C2  - 57571
SP  - 7698 - 7698
TI  - funkyheatmap: Visualising data frames with mixed data types.
JO  - JOSS
VL  - 10
IS  - 108
PY  - 2025
SN  - 2475-9066
ER  - 

TY  - COMP
AU  - Graeve, M.D.*
AU  - Bittremieux, W.*
AU  - Naake, T.*
AU  - Huber, C.*
AU  - Mattanovich, M.*
AU  - Hoffmann, N.*
AU  - Marchal, P.*
AU  - Chrone, V.G.*
AU  - Louail, P.*
AU  - Hecht, H.*
AU  - Witting, M.
AU  - Rainer, J.*
C1  - 74679
C2  - 57555
SP  - 8070 - 8070
TI  - SpectriPy: Enhancing cross-language mass spectrometry data analysis with R and python.
JO  - JOSS
VL  - 10
IS  - 109
PY  - 2025
SN  - 2475-9066
ER  - 

TY  - JOUR
AB  - maging is the process of transforming noisy, incomplete data into a space that humans
      can interpret. NIFTy is a Bayesian framework for imaging and has already successfully been
      applied to many fields in astrophysics. Previous design decisions held the performance and
      the development of methods in NIFTy back. We present a rewrite of NIFTy, coined NIFTy.re,
      which reworks the modeling principle, extends the inference strategies, and outsources much
      of the heavy lifting to JAX. The rewrite dramatically accelerates models written in NIFTy, lays
      the foundation for new types of inference machineries, improves maintainability, and enables
      interoperability between NIFTy and the JAX machine learning ecosystem.
AU  - Edenhofer, G.*
AU  - Frank, P.*
AU  - Roth, J.*
AU  - Leike, R.H.*
AU  - Guerdi, M.*
AU  - Platz, L.I.
AU  - Guardiani, M.*
AU  - Eberle, V.*
AU  - Westerkamp, M.*
AU  - Enßlin, T.A.*
C1  - 72035
C2  - 56350
TI  - Re-envisioning numerical information field theory (NIFTy.re): A library for gaussian processes and variational inference.
JO  - JOSS
PY  - 2024
SN  - 2475-9066
ER  - 

TY  - JOUR
AU  - Virshup, I.
AU  - Rybakov, S.
AU  - Theis, F.J.
AU  - Angerer, P.
AU  - Wolf, A.
C1  - 73654
C2  - 56843
TI  - anndata: Access and store annotated data matrices.
JO  - JOSS
VL  - 9
IS  - 101
PY  - 2024
SN  - 2475-9066
ER  -