id	Protein Group IDs	Positions	Position	Known Site	Peptide IDs	Mod. Peptide IDs	Best Localization Evidence ID	Best Localization MS/MS ID	Best Localization Raw File	Best Localization Scan Number	Best Identification Evidence ID	Best Identification MS/MS ID	Best Identification Raw File	Best Identification Scan Number	Proteins	Leading Proteins	Protein	Protein Names	Gene Names	Protein Descriptions	Uniprot	ENSEMBL	Pfam	Pfam Names	Pfam Descriptions	PDB	GOCC	GOCC Names	GOMF	GOMF Names	GOBP	GOBP Names	KEGG	KEGG Pathways	KEGG Pathway Names	KEGG Ortholog	Localization Prob	Score Diff	Localization Prob Exp 3	Score Diff Exp 3	PEP Exp 3	Mascot Score Exp 3	PTM Score Exp 3	Localization Prob Exp2	Score Diff Exp2	PEP Exp2	Mascot Score Exp2	PTM Score Exp2	Localization Prob Exp4	Score Diff Exp4	PEP Exp4	Mascot Score Exp4	PTM Score Exp4	Localization Prob Exp5	Score Diff Exp5	PEP Exp5	Mascot Score Exp5	PTM Score Exp5	Localization Prob Exp6	Score Diff Exp6	PEP Exp6	Mascot Score Exp6	PTM Score Exp6	Number of Phospho (ST)	Amino Acid	Sequence Window	Motifs	Best Motif	Random Match	PEP	Mascot Score	PTM Score	Modified Sequence	Phospho (ST) Probabilities	Phospho (ST) Score Diffs	Position in peptide	Charge	m/z	Mass Error [ppm]	Ratio H/L	Ratio H/L_1	Ratio H/L_2	Ratio H/L_3	Ratio H/L Normalized	Ratio H/L Normalized_1	Ratio H/L Normalized_2	Ratio H/L Normalized_3	Ratio H/L Normalized by Proteins	Ratio H/L Normalized by Protein	Ratio H/L Normalized by Protein (Unnormalized)	Ratio H/L Significance(A)	Ratio H/L Significance(B)	Ratio H/L Unmod. Pep.	Ratio H/L Localized	Ratio H/L Nmods	Ratio H/L Variability [%]	Ratio H/L Count	Ratio H/L Proteins	Ratio H/L Protein	Occupancy L	Occupancy H	Ratio H/L Exp 3	Ratio H/L Exp 3_1	Ratio H/L Exp 3_2	Ratio H/L Exp 3_3	Ratio H/L Normalized Exp 3	Ratio H/L Normalized Exp 3_1	Ratio H/L Normalized Exp 3_2	Ratio H/L Normalized Exp 3_3	Ratio H/L Normalized by Proteins Exp 3	Ratio H/L Normalized by Protein Exp 3	Ratio H/L Normalized by Protein (Unnormalized) Exp 3	Ratio H/L Significance(A) Exp 3	Ratio H/L Significance(B) Exp 3	Ratio H/L Unmod. Pep. Exp 3	Ratio H/L Localized Exp 3	Ratio H/L Nmods Exp 3	Ratio H/L Variability [%] Exp 3	Ratio H/L Count Exp 3	Ratio H/L Proteins Exp 3	Ratio H/L Protein Exp 3	Occupancy L Exp 3	Occupancy H Exp 3	Ratio H/L Exp2	Ratio H/L Exp2_1	Ratio H/L Exp2_2	Ratio H/L Exp2_3	Ratio H/L Normalized Exp2	Ratio H/L Normalized Exp2_1	Ratio H/L Normalized Exp2_2	Ratio H/L Normalized Exp2_3	Ratio H/L Normalized by Proteins Exp2	Ratio H/L Normalized by Protein Exp2	Ratio H/L Normalized by Protein (Unnormalized) Exp2	Ratio H/L Significance(A) Exp2	Ratio H/L Significance(B) Exp2	Ratio H/L Unmod. Pep. Exp2	Ratio H/L Localized Exp2	Ratio H/L Nmods Exp2	Ratio H/L Variability [%] Exp2	Ratio H/L Count Exp2	Ratio H/L Proteins Exp2	Ratio H/L Protein Exp2	Occupancy L Exp2	Occupancy H Exp2	Ratio H/L Exp4	Ratio H/L Exp4_1	Ratio H/L Exp4_2	Ratio H/L Exp4_3	Ratio H/L Normalized Exp4	Ratio H/L Normalized Exp4_1	Ratio H/L Normalized Exp4_2	Ratio H/L Normalized Exp4_3	Ratio H/L Normalized by Proteins Exp4	Ratio H/L Normalized by Protein Exp4	Ratio H/L Normalized by Protein (Unnormalized) Exp4	Ratio H/L Significance(A) Exp4	Ratio H/L Significance(B) Exp4	Ratio H/L Unmod. Pep. Exp4	Ratio H/L Localized Exp4	Ratio H/L Nmods Exp4	Ratio H/L Variability [%] Exp4	Ratio H/L Count Exp4	Ratio H/L Proteins Exp4	Ratio H/L Protein Exp4	Occupancy L Exp4	Occupancy H Exp4	Ratio H/L Exp5	Ratio H/L Exp5_1	Ratio H/L Exp5_2	Ratio H/L Exp5_3	Ratio H/L Normalized Exp5	Ratio H/L Normalized Exp5_1	Ratio H/L Normalized Exp5_2	Ratio H/L Normalized Exp5_3	Ratio H/L Normalized by Proteins Exp5	Ratio H/L Normalized by Protein Exp5	Ratio H/L Normalized by Protein (Unnormalized) Exp5	Ratio H/L Significance(A) Exp5	Ratio H/L Significance(B) Exp5	Ratio H/L Unmod. Pep. Exp5	Ratio H/L Localized Exp5	Ratio H/L Nmods Exp5	Ratio H/L Variability [%] Exp5	Ratio H/L Count Exp5	Ratio H/L Proteins Exp5	Ratio H/L Protein Exp5	Occupancy L Exp5	Occupancy H Exp5	Ratio H/L Exp6	Ratio H/L Exp6_1	Ratio H/L Exp6_2	Ratio H/L Exp6_3	Ratio H/L Normalized Exp6	Ratio H/L Normalized Exp6_1	Ratio H/L Normalized Exp6_2	Ratio H/L Normalized Exp6_3	Ratio H/L Normalized by Proteins Exp6	Ratio H/L Normalized by Protein Exp6	Ratio H/L Normalized by Protein (Unnormalized) Exp6	Ratio H/L Significance(A) Exp6	Ratio H/L Significance(B) Exp6	Ratio H/L Unmod. Pep. Exp6	Ratio H/L Localized Exp6	Ratio H/L Nmods Exp6	Ratio H/L Variability [%] Exp6	Ratio H/L Count Exp6	Ratio H/L Proteins Exp6	Ratio H/L Protein Exp6	Occupancy L Exp6	Occupancy H Exp6	Intensity	Intensity L	Intensity H	Intensity Exp 3	Intensity L Exp 3	Intensity H Exp 3	Intensity Exp2	Intensity L Exp2	Intensity H Exp2	Intensity Exp4	Intensity L Exp4	Intensity H Exp4	Intensity Exp5	Intensity L Exp5	Intensity H Exp5	Intensity Exp6	Intensity L Exp6	Intensity H Exp6	Reverse	Contaminant
0	28	323	323		2309	2473	8855	12271	BOL2102A26MA2__026-200907_AM-LRRK2-IP_WTH_KDL-II-4	2466	8855	12271	BOL2102A26MA2__026-200907_AM-LRRK2-IP_WTH_KDL-II-4	2466	CON_00707101	CON_00707101	CON_00707101			>IPI:CON_00707101.1|SWISS-PROT:P12763 (Bos taurus) Alpha-2-HS-glycoprotein precursor	P12763																0.989525	20.2358						0.405871	0	0.548867	8.32	55.688	0.988391	19.7613	1.15889E-14	49.11	167.8						0.989525	20.2358	7.31842E-18	55.69	178.04	1	S	GVASVESSSGEAF	CK1	CK1	0.081	7.31842E-18	55.69	178.04	_HTFSGVASVES(ph)SSGEAFHVGK_	HTFSGVASVES(0.99)S(0.009)S(0.001)GEAFHVGK	HT(-75.09)FS(-57.81)GVAS(-39.52)VES(20.24)S(-20.24)S(-30)GEAFHVGK	11	3	733.99507	-0.6438																			0.12709	0.12709																																																																																																																	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0		+
1	28	324	324		2309	2473	8856	12272	BOL1767A4MA2__004-20090515_AM_SILAC_IP-3	5424	8855	12271	BOL2102A26MA2__026-200907_AM-LRRK2-IP_WTH_KDL-II-4	2466	CON_00707101	CON_00707101	CON_00707101			>IPI:CON_00707101.1|SWISS-PROT:P12763 (Bos taurus) Alpha-2-HS-glycoprotein precursor	P12763																0.405871	0						0.405871	0	0.548867	8.32	55.688	0.0104423	-19.7613	1.15889E-14	49.11	167.8						0.0093723	-20.2358	7.31842E-18	55.69	178.04	1	S	VASVESSSGEAFH	CK1;CK2	CK2	0.058	7.31842E-18	55.69	178.04	_HTFSGVASVES(ph)SSGEAFHVGK_	HT(0.016)FS(0.078)GVAS(0.078)VES(0.406)S(0.406)S(0.016)GEAFHVGK	HT(-13.93)FS(-7.18)GVAS(-7.18)VES(0)S(0)S(-13.93)GEAFHVGK	12	3	733.99507	-0.74969																			0.12709	0.12709																																																																																																																	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0		+
2	45	46	46		734	801;802;803;804	2800	3882	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	2566	2800	3882	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	2566	CON_CASA1	CON_CASA1	CON_CASA1			>IPI:CON_CASA1|SWISS-PROT:P02662 Alpha-S1-casein - Bos taurus (Bovine).	P02662																0.999074	30.3341											0.999996	53.709	4.00604E-20	29.73	212.34	0.999074	30.3341	7.64962E-45	68.16	291.64						1	S	LSKDIGSESTEDQ				7.64962E-45	68.16	291.64	_DIGS(ph)ESTEDQAMEDIK_	DIGS(0.999)ES(0.001)TEDQAMEDIK	DIGS(30.33)ES(-30.33)T(-59.06)EDQAMEDIK	4	2	924.36626	-0.10225	0.075833		0.075833		0.060254		0.060254		0.40794	0.40794	0.68857	0.020318	0.020318		+	2		1	0.1477	0.1477																																																																					0.075833		0.075833		0.060254		0.060254		10.181	10.181	11.664	0.15866	0.15866		+	2		1	0.0059182	0.0059182																									3756200	3756200	0	0	0	0	0	0	0	172660	172660	0	3583600	3583600	0	0	0	0		+
3	45	48	48		734	801;802;803;804	2799	3881	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	1750	2800	3882	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	2566	CON_CASA1	CON_CASA1	CON_CASA1			>IPI:CON_CASA1|SWISS-PROT:P02662 Alpha-S1-casein - Bos taurus (Bovine).	P02662																0.81022	6.40861											0.943775	12.2494	4.00604E-20	29.73	212.34	0.81022	6.40861	7.64962E-45	68.16	291.64						1	S	KDIGSESTEDQAM				7.64962E-45	68.16	291.64	_DIGSES(ph)TEDQAM(ox)EDIK_	DIGS(0.185)ES(0.81)T(0.005)EDQAMEDIK	DIGS(-6.41)ES(6.41)T(-22.52)EDQAMEDIK	6	2	932.36372	-0.56269	0.075833		0.075833		0.060254		0.060254		0.40794	0.40794	0.68857	0.020318	0.020318		+	2		1	0.1477	0.1477																																																																					0.075833		0.075833		0.060254		0.060254		10.181	10.181	11.664	0.15866	0.15866		+	2		1	0.0059182	0.0059182																									3756200	3756200	0	0	0	0	0	0	0	172660	172660	0	3583600	3583600	0	0	0	0		+
4	45	115	115		5714;6038	6176;6515	24730	33645	BOL2102A27MA2__027-200907_AM-LRRK2-IP_WTH_KDL-II-5	2765	24725	33640	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	2801	CON_CASA1	CON_CASA1	CON_CASA1			>IPI:CON_CASA1|SWISS-PROT:P02662 Alpha-S1-casein - Bos taurus (Bovine).	P02662																1	122.785	1	357.63	7.10905E-82	90.77	357.63	1	307.44	2.99326E-50	71.27	307.44	1	167.35	1.73124E-36	78.8	276.26	1	246.744	1.19515E-97	83.99	375.38	1	122.785	2.99326E-50	78.77	307.44	1	S	LEIVPNSAEERLH	CK2	CK2	0.058	1.19515E-97	83.99	375.38	_YKVPQLEIVPNS(ph)AEER_	YKVPQLEIVPNS(1)AEER	YKVPQLEIVPNS(122.78)AEER	12	3	651.32235	-0.034325	0.26908	0.26908			0.29987	0.29987			2.0302	2.0302	2.4433	0.24706	0.24706		+	1	330.6	9	0.1477	0.1477			38.614	38.614			8.9205	8.9205			0.74609	0.74609	1	0.3851	0.3851		+	1		1	11.956	11.956																									15.31	15.31			4.4323	4.4323			0.60538	0.60538	1	0.15866	0.15866		+	1	192.53	3	7.3215	7.3215			0.0077508	0.0077508			0.007863	0.007863			1.3286	1.3286	1.1922	0.037107	0.037107		+	1	61.084	3	0.0059182	0.0059182			0.10622	0.10622			0.1047	0.1047			2.8642	2.8642	2.914	9.7942E-68	9.7942E-68		+	1	148.82	2	0.036553	0.036553			44726000	44648000	77737	3304900	3304900	0	667360	667360	0	3804700	3804700	0	34485000	34408000	77737	2463900	2463900	0		+
5	46	143	143		2990;5254	3204;3205;5668;5670	20943	28669	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	2425	11413	15734	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	1878	CON_CASA2	CON_CASA2	CON_CASA2			>IPI:CON_CASA2|SWISS-PROT:P02663 Alpha-S2-casein [Contains: Casocidin-1 - Bos taurus (Bovine).	P02663																0.976038	16.0995																0.976038	16.0995	2.27817E-21	67.18	258.06						1	S	KTVDMESTEVFTK				2.27817E-21	67.18	258.06	_TVDMES(ph)TEVFTK_	TVDMES(0.976)T(0.024)EVFTK	T(-129.6)VDMES(16.1)T(-16.1)EVFT(-113.68)K	6	2	733.80967	0.26124	0.23952	0.23952			0.18955	0.18955			1	1	5.5736	0.14152	0.14152		+	1		1	0.18955	0.18955																																																																					0.23952	0.23952			0.18955	0.18955			4.1269	4.1269	5.5736	0.28841	0.28841		+	1		1	0.04593	0.04593																									8835800	8835800	0	0	0	0	0	0	0	0	0	0	8835800	8835800	0	0	0	0		+
6	46	31	31		4116	4444	15914	21824	BOL1767A7MA2__007-20090515_AM_SILAC_IP-6	3323	15914	21824	BOL1767A7MA2__007-20090515_AM_SILAC_IP-6	3323	CON_CASA2	CON_CASA2	CON_CASA2			>IPI:CON_CASA2|SWISS-PROT:P02663 Alpha-S2-casein [Contains: Casocidin-1 - Bos taurus (Bovine).	P02663																1	63.7688						1	63.7688	4.57693E-07	31.32	139.73																1	S	NMAINPSKENLCS				4.57693E-07	31.32	139.73	_NM(ox)AINPS(ph)KENLCSTFCK_	NMAINPS(1)KENLCSTFCK	NMAINPS(63.77)KENLCS(-63.77)T(-72.57)FCK	7	3	703.96496	-0.61302	0.039888	0.039888			0.20668	0.20668			1.0904	1.0904	0.92817	0.15866	0.15866		+	1		1	0.18955	0.18955																									0.039888	0.039888			0.20668	0.20668			2.3878	2.3878	2.1997	0.15866	0.15866		+	1		1	0.086556	0.086556																																																																					219420	219420	0	0	0	0	219420	219420	0	0	0	0	0	0	0	0	0	0		+
7	47	35	35		1599	1732	6202	8799	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	2006	6202	8799	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	2006	CON_CASB	CON_CASB	CON_CASB			>IPI:CON_CASB|SWISS-PROT:P02666 Beta-casein - Bos taurus (Bovine).	P02666																1	174.906	1	144.029	3.64075E-61	87.88	323.69						1	161.12	4.4611E-107	101.29	393.7	1	174.906	4.4611E-107	99.1	393.7	1	148.075	5.36636E-68	98.44	340.41	1	S	KIEKFQSEEQQQT	CHK1;PKD	PKD	0.020748	4.4611E-107	99.1	393.7	_FQS(ph)EEQQQTEDELQDK_	FQS(1)EEQQQTEDELQDK	FQS(174.91)EEQQQT(-174.91)EDELQDK	3	2	1031.4179	0.1746	0.57755	0.57755			0.33239	0.33239			8.3417	8.3417	11.759	0.27549	0.27549		+	1	957.62	2	0.039847	0.039847			692.12	692.12			290.01	290.01			7.2163	7.2163	9.9805	0.15866	0.15866		+	1		1	40.188	40.188																																															0.00048195	0.00048195			0.00038096	0.00038096			0.015736	0.015736	0.015499	0.0015751	0.0015751		+	1		1	0.024209	0.024209																									18080000	18080000	0	1006200	1006200	0	0	0	0	1622800	1622800	0	14749000	14749000	0	701670	701670	0		+
8	104	104	104	Phosphoserine	2857	3063;3064	11014	15254	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	4360	11014	15254	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	4360	IPI00113377;IPI00753932;IPI00118632;IPI00134920;IPI00848419;IPI00848832	IPI00113377	IPI00113377	60S acidic ribosomal protein P1	Rplp1	60S acidic ribosomal protein P1;similar to acidic ribosomal phosphoprotein P1 isoform 1;similar to acidic ribosomal phosphoprotein P1 isoform 1;similar to acidic ribosomal phosphoprotein P1 isoform 1;similar to acidic ribosomal phosphoprotein P1 isoform 2;	P47955;Q58E35	ENSMUSG00000007892	PF00428	Ribosomal_60s	60s Acidic ribosomal protein		GO:0005840;GO:0030529;GO:0032991;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0044424;GO:0044444;GO:0044464	ribosome;ribonucleoprotein complex;macromolecular complex;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;intracellular part;cytoplasmic part;cell part	GO:0003735;GO:0005198	structural constituent of ribosome;structural molecule activity	GO:0006414;GO:0008152;GO:0009058;GO:0009059;GO:0009987;GO:0034645;GO:0034960;GO:0034961;GO:0043170;GO:0043283;GO:0043284;GO:0044237;GO:0044249;GO:0044260	translational elongation;metabolic process;biosynthetic process;macromolecule biosynthetic process;cellular process;cellular macromolecule biosynthetic process;cellular biopolymer metabolic process;cellular biopolymer biosynthetic process;macromolecule metabolic process;biopolymer metabolic process;biopolymer biosynthetic process;cellular metabolic process;cellular biosynthetic process;cellular macromolecule metabolic process	mmu:56040	ko03010	Ribosome	K02942	0.999941	42.2927																0.999941	42.2927	7.33668E-06	39.39	147.94						1	S	KEESEESEDDMGF	CK1	CK1	0.081	7.33668E-06	39.39	147.94	_KEESEES(ph)EDDMGFGLFD_	KEESEES(1)EDDMGFGLFD	KEES(-42.29)EES(42.29)EDDMGFGLFD	7	2	1022.3743	-0.3064	1.005	1.005	0.88086		1.0741	1.0741	0.94144		1.0413	1.0413	1.0428	0.15866	0.15866		+	1		1	1.0315	1.0315																																																																					1.005	1.005	0.88086		1.0741	1.0741	0.94144		1.0315	1.0315	1.0315	0.15866	0.15866		+	1		1	1.0413	1.0413																									305830	135590	170250	0	0	0	0	0	0	0	0	0	305830	135590	170250	0	0	0		
9	126	218	218	Phosphoserine	2819	3022	10902	15116	BOL1767A5MA2__005-20090515_AM_SILAC_IP-4	4845	10902	15116	BOL1767A5MA2__005-20090515_AM_SILAC_IP-4	4845	IPI00114945	IPI00114945	IPI00114945	Septin-2;Neural precursor cell expressed developmentally down-regulated protein 5	Sept2;Nedd-5;Nedd5	Septin-2	P42208;B2RRZ2	ENSMUSG00000026276	PF00735	Septin	Septin		GO:0000267;GO:0005624;GO:0005626;GO:0005826;GO:0005874;GO:0005876;GO:0005886;GO:0009986;GO:0016020;GO:0019717;GO:0030496;GO:0031105;GO:0032155;GO:0032991;GO:0042995;GO:0043234;GO:0044422;GO:0044424;GO:0044430;GO:0044444;GO:0044446;GO:0044448;GO:0044464	cell fraction;membrane fraction;insoluble fraction;contractile ring;microtubule;spindle microtubule;plasma membrane;cell surface;membrane;synaptosome;midbody;septin complex;cell division site part;macromolecular complex;cell projection;protein complex;organelle part;intracellular part;cytoskeletal part;cytoplasmic part;intracellular organelle part;cell cortex part;cell part	GO:0000166;GO:0003824;GO:0003924;GO:0005198;GO:0005488;GO:0005515;GO:0005525;GO:0016462;GO:0016787;GO:0016817;GO:0016818;GO:0017076;GO:0017111;GO:0019001;GO:0030234;GO:0032553;GO:0032555;GO:0032561;GO:0032947;GO:0042802	nucleotide binding;catalytic activity;GTPase activity;structural molecule activity;binding;protein binding;GTP binding;pyrophosphatase activity;hydrolase activity;hydrolase activity, acting on acid anhydrides;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;purine nucleotide binding;nucleoside-triphosphatase activity;guanyl nucleotide binding;enzyme regulator activity;ribonucleotide binding;purine ribonucleotide binding;guanyl ribonucleotide binding;protein complex scaffold;identical protein binding	GO:0000280;GO:0000910;GO:0002036;GO:0006461;GO:0006996;GO:0007067;GO:0009987;GO:0010926;GO:0016043;GO:0022402;GO:0022403;GO:0022607;GO:0032879;GO:0032880;GO:0032890;GO:0034621;GO:0034622;GO:0043623;GO:0043933;GO:0048285;GO:0050789;GO:0051049;GO:0051258;GO:0051301;GO:0051952;GO:0051955;GO:0065003;GO:0065007	nuclear division;cytokinesis;regulation of L-glutamate transport;protein complex assembly;organelle organization;mitosis;cellular process;anatomical structure formation;cellular component organization;cell cycle process;cell cycle phase;cellular component assembly;regulation of localization;regulation of protein localization;regulation of organic acid transport;cellular macromolecular complex subunit organization;cellular macromolecular complex assembly;cellular protein complex assembly;macromolecular complex subunit organization;organelle fission;regulation of biological process;regulation of transport;protein polymerization;cell division;regulation of amine transport;regulation of amino acid transport;macromolecular complex assembly;biological regulation	mmu:18000				1	179.145						1	179.145	6.01662E-42	50.49	251.61																1	S	HLPDAESDEDEDF				6.01662E-42	50.49	251.61	_IYHLPDAES(ph)DEDEDFKEQTR_	IYHLPDAES(1)DEDEDFKEQTR	IYHLPDAES(179.15)DEDEDFKEQT(-179.15)R	9	3	839.68663	-0.084894	0.16194	0.16194			0.36231	0.36231			0.48811	0.48811	0.92997	0.30046	0.30046		+	1		1	0.74228	0.74228																									0.16194	0.16194			0.36231	0.36231			0.49184	0.49184	0.94894	0.38735	0.38735		+	1		1	0.73664	0.73664																																																																					676580	568560	108020	0	0	0	676580	568560	108020	0	0	0	0	0	0	0	0	0		
10	339	229	229	Phosphoserine	4898	5289	19390	26493	BOL2102A26MA2__026-200907_AM-LRRK2-IP_WTH_KDL-II-4	2111	19387	26484	BOL2102A12MA2__012-200907_AM-LRRK2-IP_WTl_KD-H-II-4	2146	IPI00130095;IPI00654422	IPI00130095	IPI00130095	Ras GTPase-activating protein-binding protein 1;G3BP-1;ATP-dependent DNA helicase VIII;HDH-VIII;GAP SH3 domain-binding protein 1;Putative uncharacterized protein	G3bp1;G3bp;G3bp1;G3bp	Ras GTPase-activating protein-binding protein 1;Putative uncharacterized protein	P97855;Q571F9;Q5NCU1;Q3UR88	ENSMUSG00000018583;ENSMUSG00000018583	PF02136;PF00076;PF02136	NTF2;RRM_1;NTF2	Nuclear transport factor 2 (NTF2) domain;RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);Nuclear transport factor 2 (NTF2) domain		GO:0005634;GO:0005829;GO:0005886;GO:0016020;GO:0043226;GO:0043227;GO:0043229;GO:0043231;GO:0044424;GO:0044444;GO:0044464;GO:0005622;GO:0044464	nucleus;cytosol;plasma membrane;membrane;organelle;membrane-bounded organelle;intracellular organelle;intracellular membrane-bounded organelle;intracellular part;cytoplasmic part;cell part;intracellular;cell part	GO:0000166;GO:0001882;GO:0001883;GO:0003676;GO:0003677;GO:0003723;GO:0003824;GO:0004386;GO:0004518;GO:0004519;GO:0005488;GO:0005524;GO:0016462;GO:0016787;GO:0016788;GO:0016817;GO:0016818;GO:0017076;GO:0017111;GO:0030554;GO:0032553;GO:0032555;GO:0032559	nucleotide binding;nucleoside binding;purine nucleoside binding;nucleic acid binding;DNA binding;RNA binding;catalytic activity;helicase activity;nuclease activity;endonuclease activity;binding;ATP binding;pyrophosphatase activity;hydrolase activity;hydrolase activity, acting on ester bonds;hydrolase activity, acting on acid anhydrides;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;purine nucleotide binding;nucleoside-triphosphatase activity;adenyl nucleotide binding;ribonucleotide binding;purine ribonucleotide binding;adenyl ribonucleotide binding	GO:0006810;GO:0051234;GO:0006810;GO:0051234	transport;establishment of localization;transport;establishment of localization	mmu:27041				0.779688	8.49912	0.301603	-3.407	5.70989E-16	90.18	195.74	0.166548	-3.9831	1.28651E-07	62.16	159.38	0.508358	3.15551	9.73188E-20	95.31	208.55	0.290424	-3.62098	1.10585E-12	81	183.28	0.779688	8.49912	2.00508E-12	76.82	179.66	1	S	PDDVQKSTSPAPA				9.73188E-20	95.31	208.55	_S(ph)TSPAPADVAPAQEDLR_	S(0.78)T(0.11)S(0.11)PAPADVAPAQEDLR	S(8.5)T(-8.5)S(-8.5)PAPADVAPAQEDLR	1	2	902.90929	-0.3981	0.81118	0.81118			0.81996	0.81996			1.1644	1.1644	0.96774	0.33473	0.33473		+	1		1	0.70417	0.70417																																															1.4574	1.4574			0.66048	0.66048			0.95081	0.95081	1.2048	0.49985	0.49985			1		1	0.69464	0.69464																									0.81118	0.81118			0.81996	0.81996			1.0352	1.0352	1.0129	0.4461	0.4461		+	1		1	0.79204	0.79204			2526600	1368300	1158300	0	0	0	0	0	0	237660	152240	85416	0	0	0	2288900	1216100	1072900		
11	339	231	231	Phosphoserine	4898	5289	19385	26482	BOL2102A5MA2__005-200907_AM-LRRK2-IP_WTl_KD-H-I-4	2121	19387	26484	BOL2102A12MA2__012-200907_AM-LRRK2-IP_WTl_KD-H-II-4	2146	IPI00130095;IPI00654422	IPI00130095	IPI00130095	Ras GTPase-activating protein-binding protein 1;G3BP-1;ATP-dependent DNA helicase VIII;HDH-VIII;GAP SH3 domain-binding protein 1;Putative uncharacterized protein	G3bp1;G3bp;G3bp1;G3bp	Ras GTPase-activating protein-binding protein 1;Putative uncharacterized protein	P97855;Q571F9;Q5NCU1;Q3UR88	ENSMUSG00000018583;ENSMUSG00000018583	PF02136;PF00076;PF02136	NTF2;RRM_1;NTF2	Nuclear transport factor 2 (NTF2) domain;RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);Nuclear transport factor 2 (NTF2) domain		GO:0005634;GO:0005829;GO:0005886;GO:0016020;GO:0043226;GO:0043227;GO:0043229;GO:0043231;GO:0044424;GO:0044444;GO:0044464;GO:0005622;GO:0044464	nucleus;cytosol;plasma membrane;membrane;organelle;membrane-bounded organelle;intracellular organelle;intracellular membrane-bounded organelle;intracellular part;cytoplasmic part;cell part;intracellular;cell part	GO:0000166;GO:0001882;GO:0001883;GO:0003676;GO:0003677;GO:0003723;GO:0003824;GO:0004386;GO:0004518;GO:0004519;GO:0005488;GO:0005524;GO:0016462;GO:0016787;GO:0016788;GO:0016817;GO:0016818;GO:0017076;GO:0017111;GO:0030554;GO:0032553;GO:0032555;GO:0032559	nucleotide binding;nucleoside binding;purine nucleoside binding;nucleic acid binding;DNA binding;RNA binding;catalytic activity;helicase activity;nuclease activity;endonuclease activity;binding;ATP binding;pyrophosphatase activity;hydrolase activity;hydrolase activity, acting on ester bonds;hydrolase activity, acting on acid anhydrides;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;purine nucleotide binding;nucleoside-triphosphatase activity;adenyl nucleotide binding;ribonucleotide binding;purine ribonucleotide binding;adenyl ribonucleotide binding	GO:0006810;GO:0051234;GO:0006810;GO:0051234	transport;establishment of localization;transport;establishment of localization	mmu:27041				0.674751	3.81277	0.674751	3.81277	5.70989E-16	90.18	195.74	0.416726	0	1.28651E-07	62.16	159.38	0.651723	3.16986	9.73188E-20	95.31	208.55	0.668544	3.62098	1.10585E-12	81	183.28	0.110156	-8.49912	2.00508E-12	76.82	179.66	1	S	DVQKSTSPAPADV	CHK1;PKD	PKD	0.020748	9.73188E-20	95.31	208.55	_STS(ph)PAPADVAPAQEDLR_	S(0.28)T(0.045)S(0.675)PAPADVAPAQEDLR	S(-3.81)T(-11.78)S(3.81)PAPADVAPAQEDLR	3	2	902.90929	-0.1412	0.88693	0.88693			0.66061	0.66061			0.93815	0.93815	1.0581	0.49492	0.49492			1	31.822	5	0.70417	0.70417			0.89903	0.89903			0.50409	0.50409			0.95627	0.95627	1.0112	0.16476	0.16476			1	7.1645	2	0.52715	0.52715																									1.2445	1.2445			0.66061	0.66061			0.95101	0.95101	1.0288	0.49998	0.49998			1		1	0.69464	0.69464			0.83427	0.83427			0.94739	0.94739			1.0198	1.0198	1.006	0.2866	0.2866			1	1.3716	2	0.92898	0.92898																									10478000	5305300	5172400	3123400	1394500	1728900	0	0	0	2088800	1119500	969270	5265500	2791200	2474200	0	0	0		
12	453	102	102	Phosphoserine	2856	3062	11013	15253	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	5166	11013	15253	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	5166	IPI00139795;IPI00742383	IPI00139795	IPI00139795	60S acidic ribosomal protein P2	Rplp2	60S acidic ribosomal protein P2;LOC665931 protein	P99027;Q7TNQ6	ENSMUSG00000025508	PF00428	Ribosomal_60s	60s Acidic ribosomal protein		GO:0005840;GO:0030529;GO:0032991;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0044424;GO:0044444;GO:0044464	ribosome;ribonucleoprotein complex;macromolecular complex;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;intracellular part;cytoplasmic part;cell part	GO:0003735;GO:0005198	structural constituent of ribosome;structural molecule activity	GO:0006414;GO:0008152;GO:0009058;GO:0009059;GO:0009987;GO:0034645;GO:0034960;GO:0034961;GO:0043170;GO:0043283;GO:0043284;GO:0044237;GO:0044249;GO:0044260	translational elongation;metabolic process;biosynthetic process;macromolecule biosynthetic process;cellular process;cellular macromolecule biosynthetic process;cellular biopolymer metabolic process;cellular biopolymer biosynthetic process;macromolecule metabolic process;biopolymer metabolic process;biopolymer biosynthetic process;cellular metabolic process;cellular biosynthetic process;cellular macromolecule metabolic process	mmu:67186	ko03010	Ribosome	K02943	1	205.808																1	205.808	1.634E-19	35.69	205.81						2	S	DEKKEESEESDDD				1.634E-19	35.69	205.81	_KEES(ph)EES(ph)DDDMGFGLFD_	KEES(1)EES(1)DDDMGFGLFD	KEES(205.81)EES(205.81)DDDMGFGLFD	4	2	1055.3496	-0.13582	0.94462		0.94462		1.0096		1.0096		0.99389	0.99389	1	0.19257	0.19257		+	2		1	1.0158	1.0158																																																																					0.94462		0.94462		1.0096		1.0096		0.92421	0.92421	0.95979	0.21639	0.21639		+	2		1	1.0924	1.0924																									207490	106580	100910	0	0	0	0	0	0	0	0	0	207490	106580	100910	0	0	0		
13	453	105	105	Phosphoserine	2856	3062	11013	15253	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	5166	11013	15253	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	5166	IPI00139795;IPI00742383	IPI00139795	IPI00139795	60S acidic ribosomal protein P2	Rplp2	60S acidic ribosomal protein P2;LOC665931 protein	P99027;Q7TNQ6	ENSMUSG00000025508	PF00428	Ribosomal_60s	60s Acidic ribosomal protein		GO:0005840;GO:0030529;GO:0032991;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0044424;GO:0044444;GO:0044464	ribosome;ribonucleoprotein complex;macromolecular complex;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;intracellular part;cytoplasmic part;cell part	GO:0003735;GO:0005198	structural constituent of ribosome;structural molecule activity	GO:0006414;GO:0008152;GO:0009058;GO:0009059;GO:0009987;GO:0034645;GO:0034960;GO:0034961;GO:0043170;GO:0043283;GO:0043284;GO:0044237;GO:0044249;GO:0044260	translational elongation;metabolic process;biosynthetic process;macromolecule biosynthetic process;cellular process;cellular macromolecule biosynthetic process;cellular biopolymer metabolic process;cellular biopolymer biosynthetic process;macromolecule metabolic process;biopolymer metabolic process;biopolymer biosynthetic process;cellular metabolic process;cellular biosynthetic process;cellular macromolecule metabolic process	mmu:67186	ko03010	Ribosome	K02943	1	205.808																1	205.808	1.634E-19	35.69	205.81						2	S	KEESEESDDDMGF	CK1	CK1	0.081	1.634E-19	35.69	205.81	_KEES(ph)EES(ph)DDDMGFGLFD_	KEES(1)EES(1)DDDMGFGLFD	KEES(205.81)EES(205.81)DDDMGFGLFD	7	2	1055.3496	-0.13582	0.94462		0.94462		1.0096		1.0096		0.99389	0.99389	1	0.19257	0.19257		+	2		1	1.0158	1.0158																																																																					0.94462		0.94462		1.0096		1.0096		0.92421	0.92421	0.95979	0.21639	0.21639		+	2		1	1.0924	1.0924																									207490	106580	100910	0	0	0	0	0	0	0	0	0	207490	106580	100910	0	0	0		
14	685;756	710;709	710	Phosphoserine	4414	4766	17315	23666	BOL2102A10MA2__010-200907_AM-LRRK2-IP_WTl_KD-H-II-2	1381	17315	23666	BOL2102A10MA2__010-200907_AM-LRRK2-IP_WTl_KD-H-II-2	1381	IPI00330262;IPI00400350;IPI00653366;IPI00400349;IPI00654246	IPI00330262;IPI00400349	IPI00330262	Pumilio homolog 1;Pumilio homolog 1;Putative uncharacterized protein;Pumilio homolog 1;Pumilio 1 (Drosophila)	Pum1;Kiaa0099;Pum1;Kiaa0099;Pum1;Pum1;Kiaa0099;Pum1;RP24-233L10.1-005	Isoform 1 of Pumilio homolog 1;Isoform 3 of Pumilio homolog 1;Putative uncharacterized protein;Isoform 2 of Pumilio homolog 1;Putative uncharacterized protein	Q80U78-1;Q80U78;B1ASF2;Q3UR00;Q80U78-3;Q3TQ21;Q3TTW5;Q80U78-2;B1ASF3;Q3U4T5;A8WHM8;Q3UHW0	ENSMUSG00000028580;ENSMUSG00000028580;ENSMUSG00000028580;ENSMUSG00000028580;ENSMUSG00000028580	PF00806;PF00806;PF00806;PF00806;PF00806	PUF;PUF;PUF;PUF;PUF	Pumilio-family RNA binding repeat;Pumilio-family RNA binding repeat;Pumilio-family RNA binding repeat;Pumilio-family RNA binding repeat;Pumilio-family RNA binding repeat		GO:0005737;GO:0044424;GO:0044464;GO:0005737;GO:0044424;GO:0044464;GO:0005737;GO:0044424;GO:0044464	cytoplasm;intracellular part;cell part;cytoplasm;intracellular part;cell part;cytoplasm;intracellular part;cell part	GO:0003676;GO:0003723;GO:0005488;GO:0003676;GO:0003723;GO:0005488;GO:0003676;GO:0003723;GO:0005488;GO:0003676;GO:0003723;GO:0005488;GO:0003676;GO:0003723;GO:0005488	nucleic acid binding;RNA binding;binding;nucleic acid binding;RNA binding;binding;nucleic acid binding;RNA binding;binding;nucleic acid binding;RNA binding;binding;nucleic acid binding;RNA binding;binding	GO:0006417;GO:0009889;GO:0010468;GO:0010556;GO:0010608;GO:0019222;GO:0031323;GO:0031326;GO:0032268;GO:0050789;GO:0050794;GO:0051246;GO:0060255;GO:0065007;GO:0080090;GO:0006417;GO:0009889;GO:0010468;GO:0010556;GO:0010608;GO:0019222;GO:0031323;GO:0031326;GO:0032268;GO:0050789;GO:0050794;GO:0051246;GO:0060255;GO:0065007;GO:0080090;GO:0006417;GO:0009889;GO:0010468;GO:0010556;GO:0010608;GO:0019222;GO:0031323;GO:0031326;GO:0032268;GO:0050789;GO:0050794;GO:0051246;GO:0060255;GO:0065007;GO:0080090	regulation of translation;regulation of biosynthetic process;regulation of gene expression;regulation of macromolecule biosynthetic process;posttranscriptional regulation of gene expression;regulation of metabolic process;regulation of cellular metabolic process;regulation of cellular biosynthetic process;regulation of cellular protein metabolic process;regulation of biological process;regulation of cellular process;regulation of protein metabolic process;regulation of macromolecule metabolic process;biological regulation;regulation of primary metabolic process;regulation of translation;regulation of biosynthetic process;regulation of gene expression;regulation of macromolecule biosynthetic process;posttranscriptional regulation of gene expression;regulation of metabolic process;regulation of cellular metabolic process;regulation of cellular biosynthetic process;regulation of cellular protein metabolic process;regulation of biological process;regulation of cellular process;regulation of protein metabolic process;regulation of macromolecule metabolic process;biological regulation;regulation of primary metabolic process;regulation of translation;regulation of biosynthetic process;regulation of gene expression;regulation of macromolecule biosynthetic process;posttranscriptional regulation of gene expression;regulation of metabolic process;regulation of cellular metabolic process;regulation of cellular biosynthetic process;regulation of cellular protein metabolic process;regulation of biological process;regulation of cellular process;regulation of protein metabolic process;regulation of macromolecule metabolic process;biological regulation;regulation of primary metabolic process	mmu:80912;mmu:80912;mmu:80912				0.999999	59.7488	0.999736	35.8493	1.73321E-05	46.56	140.37	0.999961	44.8856	0.000375192	35.12	127.93	0.999999	59.7488	2.7464E-07	41.22	153.28	0.999957	46.83	1.73321E-05	41.44	140.37	0.998933	32.9359	0.00301705	39.52	115.98	1	S	SGSRRDSLTGSSD	AURORA;AURORA-A;CAMK2;CK1;GSK3;PKA;PKA/AKT	PKA/AKT	0.00111111	2.7464E-07	41.22	153.28	_RDS(ph)LTGSSDLYK_	RDS(1)LTGSSDLYK	RDS(59.75)LT(-59.75)GS(-80.22)S(-80.22)DLYK	3	2	711.31905	0.12146	0.70755	0.70755			0.56833	0.56833			0.61353;0.61727	0.61353	0.82531	0.4441	0.4441		+	1	17.389	5	0.92633;0.92071	0.92633			0.9291	0.9291			0.48592	0.48592			0.55109;0.6063	0.55109	0.58447	0.15866	0.15866		+	1		1	0.88175;0.80146	0.88175			0.43967	0.43967			0.56833	0.56833			0.67324;0.69382	0.67324	0.86789	0.38962	0.38962		+	1		1	0.84417;0.81913	0.84417			1.1441	1.1441			0.50282	0.50282			0.51609;0.36098	0.51609	0.54699	0.15866	0.15866		+	1		1	0.97429;1.3929	0.97429			0.58193	0.58193			0.68525	0.68525			0.71372;0.70832	0.71372	0.65707	0.4751	0.4751		+	1		1	0.9601;0.96743	0.9601			0.70755	0.70755			0.71053	0.71053			0.6672;0.63377	0.6672	0.6855	0.26581	0.26581		+	1		1	1.0649;1.1211	1.0649			2716200	1483700	1232600	575810	265280	310530	445940	297750	148190	453860	204590	249270	864200	487600	376600	376430	228440	147990		
15	685;756	229;229	229		4591	4960	18072	24667	BOL1767A3MA2__003-20090515_AM_SILAC_IP-2	10154	18072	24667	BOL1767A3MA2__003-20090515_AM_SILAC_IP-2	10154	IPI00330262;IPI00400350;IPI00400349;IPI00400351	IPI00330262;IPI00400349	IPI00330262	Pumilio homolog 1;Pumilio homolog 1;Pumilio homolog 1;Pumilio homolog 1	Pum1;Kiaa0099;Pum1;Kiaa0099;Pum1;Kiaa0099;Pum1;Kiaa0099	Isoform 1 of Pumilio homolog 1;Isoform 3 of Pumilio homolog 1;Isoform 2 of Pumilio homolog 1;Putative uncharacterized protein	Q80U78-1;Q80U78;B1ASF2;Q3UR00;Q80U78-3;Q3TQ21;Q80U78-2;B1ASF3;Q3U4T5;Q80U78-4;Q3TRI4	ENSMUSG00000028580;ENSMUSG00000028580;ENSMUSG00000028580;ENSMUSG00000028580	PF00806;PF00806;PF00806;PF00806	PUF;PUF;PUF;PUF	Pumilio-family RNA binding repeat;Pumilio-family RNA binding repeat;Pumilio-family RNA binding repeat;Pumilio-family RNA binding repeat		GO:0005737;GO:0044424;GO:0044464;GO:0005737;GO:0044424;GO:0044464;GO:0005737;GO:0044424;GO:0044464;GO:0005737;GO:0044424;GO:0044464	cytoplasm;intracellular part;cell part;cytoplasm;intracellular part;cell part;cytoplasm;intracellular part;cell part;cytoplasm;intracellular part;cell part	GO:0003676;GO:0003723;GO:0005488;GO:0003676;GO:0003723;GO:0005488;GO:0003676;GO:0003723;GO:0005488;GO:0003676;GO:0003723;GO:0005488	nucleic acid binding;RNA binding;binding;nucleic acid binding;RNA binding;binding;nucleic acid binding;RNA binding;binding;nucleic acid binding;RNA binding;binding	GO:0006417;GO:0009889;GO:0010468;GO:0010556;GO:0010608;GO:0019222;GO:0031323;GO:0031326;GO:0032268;GO:0050789;GO:0050794;GO:0051246;GO:0060255;GO:0065007;GO:0080090;GO:0006417;GO:0009889;GO:0010468;GO:0010556;GO:0010608;GO:0019222;GO:0031323;GO:0031326;GO:0032268;GO:0050789;GO:0050794;GO:0051246;GO:0060255;GO:0065007;GO:0080090;GO:0006417;GO:0009889;GO:0010468;GO:0010556;GO:0010608;GO:0019222;GO:0031323;GO:0031326;GO:0032268;GO:0050789;GO:0050794;GO:0051246;GO:0060255;GO:0065007;GO:0080090;GO:0006417;GO:0009889;GO:0010468;GO:0010556;GO:0010608;GO:0019222;GO:0031323;GO:0031326;GO:0032268;GO:0050789;GO:0050794;GO:0051246;GO:0060255;GO:0065007;GO:0080090	regulation of translation;regulation of biosynthetic process;regulation of gene expression;regulation of macromolecule biosynthetic process;posttranscriptional regulation of gene expression;regulation of metabolic process;regulation of cellular metabolic process;regulation of cellular biosynthetic process;regulation of cellular protein metabolic process;regulation of biological process;regulation of cellular process;regulation of protein metabolic process;regulation of macromolecule metabolic process;biological regulation;regulation of primary metabolic process;regulation of translation;regulation of biosynthetic process;regulation of gene expression;regulation of macromolecule biosynthetic process;posttranscriptional regulation of gene expression;regulation of metabolic process;regulation of cellular metabolic process;regulation of cellular biosynthetic process;regulation of cellular protein metabolic process;regulation of biological process;regulation of cellular process;regulation of protein metabolic process;regulation of macromolecule metabolic process;biological regulation;regulation of primary metabolic process;regulation of translation;regulation of biosynthetic process;regulation of gene expression;regulation of macromolecule biosynthetic process;posttranscriptional regulation of gene expression;regulation of metabolic process;regulation of cellular metabolic process;regulation of cellular biosynthetic process;regulation of cellular protein metabolic process;regulation of biological process;regulation of cellular process;regulation of protein metabolic process;regulation of macromolecule metabolic process;biological regulation;regulation of primary metabolic process;regulation of translation;regulation of biosynthetic process;regulation of gene expression;regulation of macromolecule biosynthetic process;posttranscriptional regulation of gene expression;regulation of metabolic process;regulation of cellular metabolic process;regulation of cellular biosynthetic process;regulation of cellular protein metabolic process;regulation of biological process;regulation of cellular process;regulation of protein metabolic process;regulation of macromolecule metabolic process;biological regulation;regulation of primary metabolic process	mmu:80912;mmu:80912;mmu:80912;mmu:80912				0.997391	25.952						0.997391	25.952	3.35839E-07	29.52	114.08																1	S	EYVLSSSPGDSCL	GSK3;NEK6;Polo box	Polo box	0.00405	3.35839E-07	29.52	114.08	_SESGGLGVSMVEYVLSSS(ph)PGDSCLR_	SESGGLGVSMVEYVLSS(0.003)S(0.997)PGDSCLR	S(-90.87)ES(-91.88)GGLGVS(-81.03)MVEYVLS(-41.76)S(-25.95)S(25.95)PGDS(-50.14)CLR	18	3	885.05556	-0.81775	0.61692	0.61692			1.0129	1.0129			1.0935;1.1002	1.0935	0.71959	0.19065	0.19065		+	1		1	0.92633;0.92071	0.92633																									0.61692	0.61692			1.0129	1.0129			1.1999;1.2366	1.1999	1.2178	0.15866	0.15866		+	1		1	0.84417;0.81913	0.84417																																																																					534720	318680	216040	0	0	0	534720	318680	216040	0	0	0	0	0	0	0	0	0		
16	696	263	263	Phosphoserine	1300	1407	5067	7212	BOL2102A25MA2__025-200907_AM-LRRK2-IP_WTH_KDL-II-3	1294	5067	7212	BOL2102A25MA2__025-200907_AM-LRRK2-IP_WTH_KDL-II-3	1294	IPI00330804	IPI00330804	IPI00330804	Heat shock protein HSP 90-alpha;HSP 86;Tumor-specific transplantation 86 kDa antigen	Hsp90aa1;Hsp86;Hsp86-1;Hspca	Heat shock protein HSP 90-alpha	P07901;A0PJ91;Q3TJU7;Q3TKA2;Q3TKB9;Q3TKG0;Q3UIF3;Q80Y52;Q8C2A9;Q8C5U3	ENSMUSG00000021270	PF02518;PF00183	HATPase_c;HSP90	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;Hsp90 protein		GO:0005829;GO:0016023;GO:0031410;GO:0031982;GO:0031988;GO:0042470;GO:0043226;GO:0043227;GO:0043229;GO:0043231;GO:0044424;GO:0044444;GO:0044464;GO:0048770	cytosol;cytoplasmic membrane-bounded vesicle;cytoplasmic vesicle;vesicle;membrane-bounded vesicle;melanosome;organelle;membrane-bounded organelle;intracellular organelle;intracellular membrane-bounded organelle;intracellular part;cytoplasmic part;cell part;pigment granule	GO:0000166;GO:0001882;GO:0001883;GO:0005488;GO:0005515;GO:0005524;GO:0017076;GO:0019904;GO:0030234;GO:0030235;GO:0030554;GO:0030911;GO:0032553;GO:0032555;GO:0032559;GO:0042802;GO:0042803;GO:0046983;GO:0051082	nucleotide binding;nucleoside binding;purine nucleoside binding;binding;protein binding;ATP binding;purine nucleotide binding;protein domain specific binding;enzyme regulator activity;nitric-oxide synthase regulator activity;adenyl nucleotide binding;TPR domain binding;ribonucleotide binding;purine ribonucleotide binding;adenyl ribonucleotide binding;identical protein binding;protein homodimerization activity;protein dimerization activity;unfolded protein binding	GO:0002682;GO:0002684;GO:0002694;GO:0002696;GO:0006457;GO:0006807;GO:0006809;GO:0006950;GO:0006986;GO:0008152;GO:0009058;GO:0009607;GO:0009889;GO:0009891;GO:0009893;GO:0009987;GO:0019222;GO:0019538;GO:0031323;GO:0031325;GO:0031326;GO:0031328;GO:0034641;GO:0034960;GO:0042026;GO:0042221;GO:0043170;GO:0043283;GO:0044237;GO:0044238;GO:0044249;GO:0044260;GO:0044267;GO:0044271;GO:0045428;GO:0045429;GO:0045580;GO:0045582;GO:0045583;GO:0045585;GO:0045595;GO:0045597;GO:0045619;GO:0045621;GO:0046209;GO:0048518;GO:0048522;GO:0050789;GO:0050793;GO:0050794;GO:0050863;GO:0050865;GO:0050867;GO:0050870;GO:0050896;GO:0051094;GO:0051171;GO:0051173;GO:0051239;GO:0051249;GO:0051251;GO:0051789;GO:0065007	regulation of immune system process;positive regulation of immune system process;regulation of leukocyte activation;positive regulation of leukocyte activation;protein folding;nitrogen compound metabolic process;nitric oxide biosynthetic process;response to stress;response to unfolded protein;metabolic process;biosynthetic process;response to biotic stimulus;regulation of biosynthetic process;positive regulation of biosynthetic process;positive regulation of metabolic process;cellular process;regulation of metabolic process;protein metabolic process;regulation of cellular metabolic process;positive regulation of cellular metabolic process;regulation of cellular biosynthetic process;positive regulation of cellular biosynthetic process;cellular nitrogen compound metabolic process;cellular biopolymer metabolic process;protein refolding;response to chemical stimulus;macromolecule metabolic process;biopolymer metabolic process;cellular metabolic process;primary metabolic process;cellular biosynthetic process;cellular macromolecule metabolic process;cellular protein metabolic process;nitrogen compound biosynthetic process;regulation of nitric oxide biosynthetic process;positive regulation of nitric oxide biosynthetic process;regulation of T cell differentiation;positive regulation of T cell differentiation;regulation of cytotoxic T cell differentiation;positive regulation of cytotoxic T cell differentiation;regulation of cell differentiation;positive regulation of cell differentiation;regulation of lymphocyte differentiation;positive regulation of lymphocyte differentiation;nitric oxide metabolic process;positive regulation of biological process;positive regulation of cellular process;regulation of biological process;regulation of developmental process;regulation of cellular process;regulation of T cell activation;regulation of cell activation;positive regulation of cell activation;positive regulation of T cell activation;response to stimulus;positive regulation of developmental process;regulation of nitrogen compound metabolic process;positive regulation of nitrogen compound metabolic process;regulation of multicellular organismal process;regulation of lymphocyte activation;positive regulation of lymphocyte activation;response to protein stimulus;biological regulation	mmu:15519	ko04914;ko04612;ko05200;ko05215	Progesterone-mediated oocyte maturation;Antigen processing and presentation;Pathways in cancer;Prostate cancer	K04079	0.999943	42.4113																					0.999943	42.4113	0.00631702	39.78	86.874	1	S	EIEDVGSDEEEEE	CK2	CK2	0.058	0.00631702	39.78	86.874	_ESDDKPEIEDVGS(ph)DEEEEEKK_	ESDDKPEIEDVGS(1)DEEEEEKK	ES(-42.41)DDKPEIEDVGS(42.41)DEEEEEKK	13	3	839.34096	-0.49762	0.692	0.692			0.68071	0.68071			1.0686	1.0686	0.85359	0.48731	0.48731		+	1		1	0.637	0.637																																																																																											0.692	0.692			0.68071	0.68071			0.86902	0.86902	0.83351	0.15866	0.15866		+	1		1	0.7833	0.7833			271030	143420	127610	0	0	0	0	0	0	0	0	0	0	0	0	271030	143420	127610		
17	755;792	4245;4393	4245	Phosphoserine	4867	5257	19273	26297	BOL2102A23MA2__023-200907_AM-LRRK2-IP_WTH_KDL-II-1	1699	19273	26297	BOL2102A23MA2__023-200907_AM-LRRK2-IP_WTH_KDL-II-1	1699	IPI00400215;IPI00230061;IPI00400214;IPI00625928;IPI00229509;IPI00421271;IPI00468273;IPI00421267;IPI00400209;IPI00626385;IPI00421268	IPI00400215;IPI00626385	IPI00400215	Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6;Plectin-1;Plectin-6	Plec1;Plec1;Plec1;Plec1;Plec1;Plec1;Plec1;Plec1;Plec1;Plec1	Isoform PLEC-1A of Plectin-1;Isoform PLEC-0 of Plectin-1;Isoform PLEC-1G of Plectin-1;Isoform PLEC-1B of Plectin-1;Isoform PLEC-1I of Plectin-1;Isoform PLEC-1F of Plectin-1;Isoform PLEC-1E of Plectin-1;Isoform PLEC-1D of Plectin-1;Isoform PLEC-1H of Plecti	Q9QXS1-3;Q9QXS1;Q05CR3;Q9QXS1-8;Q8C8S5;Q9QXS1-14;Q6S385;Q9QXS1-5;Q6S387;Q9QXS1-16;Q9QXS1-13;Q6S393;Q9QXS1-12;Q6S392;Q9QXS1-10;Q6S388;Q9QXS1-15;Q6S390;Q9QXS1-2;Q499F9	ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565;ENSMUSG00000022565	PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501;PF00307;PF00681;PF03501	CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin;CH;Plectin;S10_plectin	Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain;Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain	1SH5;1SH6;1SH5;1SH6;1SH5;1SH6;1SH5;1SH6;1SH5;1SH6;1SH5;1SH6;1SH5;1SH6;1SH5;1SH6;1SH5;1SH6;1SH5;1SH6	GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464;GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464	cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part;cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part	GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092;GO:0003779;GO:0005488;GO:0005515;GO:0008092	actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding;actin binding;binding;protein binding;cytoskeletal protein binding			mmu:18810;mmu:18810;mmu:18810;mmu:18810;mmu:18810;mmu:18810;mmu:18810;mmu:18810;mmu:18810;mmu:18810			K10388	0.970452	15.8403																					0.970452	15.8403	2.83919E-20	87.9	187	1	S	FRSRSSSVGSSSS	CAMK2;CK1;GSK3;PKA/AKT	PKA/AKT	0.001764	2.83919E-20	87.9	187	_SSS(ph)VGSSSSYPISSAGPR_	S(0.025)S(0.004)S(0.97)VGSSSSYPISSAGPR	S(-15.84)S(-23.58)S(15.84)VGS(-66.84)S(-76.83)S(-95.77)S(-113.28)YPIS(-148.54)S(-155.72)AGPR	3	2	896.8911	-0.02851	4.5643	4.5643			2.097	2.097			0.90463;0.70421	0.90463	1.4657	0.0077584	0.0077584		+	1		1	2.3181;2.9778	2.3181																																																																																											4.5643	4.5643			2.097	2.097			1.0741;	1.0741	1.2016	0.027922	0.027922		+	1		1	1.9523;	1.9523			217390	31024	186370	0	0	0	0	0	0	0	0	0	0	0	0	217390	31024	186370		
18	755	21	21		5224	5635	20816	28457	BOL2102A23MA2__023-200907_AM-LRRK2-IP_WTH_KDL-II-1	3622	20816	28457	BOL2102A23MA2__023-200907_AM-LRRK2-IP_WTH_KDL-II-1	3622	IPI00400215	IPI00400215	IPI00400215	Plectin-1;Plectin-6	Plec1	Isoform PLEC-1A of Plectin-1	Q9QXS1-3;Q9QXS1;Q05CR3	ENSMUSG00000022565	PF00307;PF00681;PF03501	CH;Plectin;S10_plectin	Calponin homology (CH) domain;Plectin repeat;Plectin/S10 domain	1SH5;1SH6	GO:0000267;GO:0005626;GO:0005856;GO:0043226;GO:0043228;GO:0043229;GO:0043232;GO:0043292;GO:0044424;GO:0044444;GO:0044464	cell fraction;insoluble fraction;cytoskeleton;organelle;non-membrane-bounded organelle;intracellular organelle;intracellular non-membrane-bounded organelle;contractile fiber;intracellular part;cytoplasmic part;cell part	GO:0003779;GO:0005488;GO:0005515;GO:0008092	actin binding;binding;protein binding;cytoskeletal protein binding			mmu:18810			K10388	0.999515	33.6373																0.999515	33.6373	4.43231E-09	61.97	183.16	0.999515	33.6373	4.43231E-09	70.01	183.16	1	S	GSKRTSSEDNLYL	CAMK2;PKA	PKA	0.003024	4.43231E-09	70.01	183.16	_TSS(ph)EDNLYLAVLR_	TSS(1)EDNLYLAVLR	T(-42.8)S(-33.64)S(33.64)EDNLYLAVLR	3	2	780.8689	0.39202	3.8015	3.8015			2.2515	2.2515			0.9713	0.9713	1.2207	0.0050697	0.0050697		+	1	78.24	2	2.3181	2.3181																																																																					5.1275	5.1275			3.9152	3.9152			1.3105	1.3105	1.3331	1.9145E-08	1.9145E-08		+	1		1	2.9875	2.9875			2.8183	2.8183			1.2948	1.2948			0.66322	0.66322	0.74193	0.15866	0.15866		+	1		1	1.9523	1.9523			280990	0	280990	0	0	0	0	0	0	0	0	0	153340	0	153340	127660	0	127660		
19	892	14	14	Phosphoserine	11	12	36	43	BOL2102A18MA2__018-200907_AM-LRRK2-IP_WTH_KDL-I-3	2886	36	43	BOL2102A18MA2__018-200907_AM-LRRK2-IP_WTH_KDL-I-3	2886	IPI00719915;IPI00406706	IPI00719915	IPI00719915	Ribonucleoprotein PTB-binding 1;Protein raver-1;Ribonucleoprotein PTB-binding 1;Protein raver-1	Raver1;Kiaa1978;Raver1;Kiaa1978	Isoform 1 of Ribonucleoprotein PTB-binding 1;Isoform 2 of Ribonucleoprotein PTB-binding 1	Q9CW46-1;Q9CW46;Q9CW46-2	ENSMUSG00000010205;ENSMUSG00000010205	PF00076;PF00076	RRM_1;RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1WI6;1WI6	GO:0005634;GO:0005737;GO:0043226;GO:0043227;GO:0043229;GO:0043231;GO:0044424;GO:0044464;GO:0005634;GO:0005737;GO:0043226;GO:0043227;GO:0043229;GO:0043231;GO:0044424;GO:0044464	nucleus;cytoplasm;organelle;membrane-bounded organelle;intracellular organelle;intracellular membrane-bounded organelle;intracellular part;cell part;nucleus;cytoplasm;organelle;membrane-bounded organelle;intracellular organelle;intracellular membrane-bounded organelle;intracellular part;cell part	GO:0000166;GO:0003676;GO:0003723;GO:0005488;GO:0000166;GO:0003676;GO:0003723;GO:0005488	nucleotide binding;nucleic acid binding;RNA binding;binding;nucleotide binding;nucleic acid binding;RNA binding;binding			mmu:71766;mmu:71766				0.999949	46.4512																0.999949	46.4512	2.79365E-07	55.01	110.1						1	S	THRPPLSPEAEAE	ERK/MAPK;WW GroupIV	WW GroupIV	0.0023175	2.79365E-07	55.01	110.1	_(ac)AADVSVTHRPPLS(ph)PEAEAEAETPETVDR_	AADVSVTHRPPLS(1)PEAEAEAETPETVDR	AADVS(-53.17)VT(-46.45)HRPPLS(46.45)PEAEAEAET(-46.45)PET(-60.3)VDR	13	3	1032.8101	0.12717	0.93306	0.93306			1.1043	1.1043			0.8985	0.8985	0.71517	0.14483	0.14483		+	1		1	1.2291	1.2291																																																																					0.93306	0.93306			1.1043	1.1043			1	1	1	0.13644	0.13644		+	1		1	1.1043	1.1043																									516220	204360	311870	0	0	0	0	0	0	0	0	0	516220	204360	311870	0	0	0		
20	339	230	230		4898	5289	19391	26494	BOL1767A4MA2__004-20090515_AM_SILAC_IP-3	4257	19387	26484	BOL2102A12MA2__012-200907_AM-LRRK2-IP_WTl_KD-H-II-4	2146	IPI00130095;IPI00654422	IPI00130095	IPI00130095	Ras GTPase-activating protein-binding protein 1;G3BP-1;ATP-dependent DNA helicase VIII;HDH-VIII;GAP SH3 domain-binding protein 1;Putative uncharacterized protein	G3bp1;G3bp;G3bp1;G3bp	Ras GTPase-activating protein-binding protein 1;Putative uncharacterized protein	P97855;Q571F9;Q5NCU1;Q3UR88	ENSMUSG00000018583;ENSMUSG00000018583	PF02136;PF00076;PF02136	NTF2;RRM_1;NTF2	Nuclear transport factor 2 (NTF2) domain;RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);Nuclear transport factor 2 (NTF2) domain		GO:0005634;GO:0005829;GO:0005886;GO:0016020;GO:0043226;GO:0043227;GO:0043229;GO:0043231;GO:0044424;GO:0044444;GO:0044464;GO:0005622;GO:0044464	nucleus;cytosol;plasma membrane;membrane;organelle;membrane-bounded organelle;intracellular organelle;intracellular membrane-bounded organelle;intracellular part;cytoplasmic part;cell part;intracellular;cell part	GO:0000166;GO:0001882;GO:0001883;GO:0003676;GO:0003677;GO:0003723;GO:0003824;GO:0004386;GO:0004518;GO:0004519;GO:0005488;GO:0005524;GO:0016462;GO:0016787;GO:0016788;GO:0016817;GO:0016818;GO:0017076;GO:0017111;GO:0030554;GO:0032553;GO:0032555;GO:0032559	nucleotide binding;nucleoside binding;purine nucleoside binding;nucleic acid binding;DNA binding;RNA binding;catalytic activity;helicase activity;nuclease activity;endonuclease activity;binding;ATP binding;pyrophosphatase activity;hydrolase activity;hydrolase activity, acting on ester bonds;hydrolase activity, acting on acid anhydrides;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;purine nucleotide binding;nucleoside-triphosphatase activity;adenyl nucleotide binding;ribonucleotide binding;purine ribonucleotide binding;adenyl ribonucleotide binding	GO:0006810;GO:0051234;GO:0006810;GO:0051234	transport;establishment of localization;transport;establishment of localization	mmu:27041				0.416726	0	0.044792	-11.7794	5.70989E-16	90.18	195.74	0.416726	0	1.28651E-07	62.16	159.38	0.245821	-3.15551	9.73188E-20	95.31	208.55	0.0410318	-12.1201	1.10585E-12	81	183.28	0.110156	-8.49912	2.00508E-12	76.82	179.66	1	T	DDVQKSTSPAPAD	FHA KAPP	FHA KAPP	0.155	9.73188E-20	95.31	208.55	_ST(ph)SPAPADVAPAQEDLR_	S(0.167)T(0.417)S(0.417)PAPADVAPAQEDLR	S(-3.98)T(0)S(0)PAPADVAPAQEDLR	2	2	902.90929	-0.4219																			0.70417	0.70417																																																																																																																	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0		
21	442	472	472		2617	2794	10146	14032	BOL2102A21MA2__021-200907_AM-LRRK2-IP_WTH_KDL-I-6	4673	10145	14031	BOL2102A16MA2__016-200907_AM-LRRK2-IP_WTH_KDL-I-1	4410	IPI00830385;IPI00137577	IPI00830385	IPI00830385	Ubiquitin carboxyl-terminal hydrolase 21;Ubiquitin thioesterase 21;Ubiquitin-specific-processing protease 21;Deubiquitinating enzyme 21	Usp21;Usp23	63 kDa protein;Ubiquitin carboxyl-terminal hydrolase 21	Q9QZL6	ENSMUSG00000053483	PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase		GO:0005634;GO:0043226;GO:0043227;GO:0043229;GO:0043231;GO:0044424;GO:0044464	nucleus;organelle;membrane-bounded organelle;intracellular organelle;intracellular membrane-bounded organelle;intracellular part;cell part	GO:0003712;GO:0003713;GO:0003824;GO:0004221;GO:0004843;GO:0005488;GO:0005515;GO:0008134;GO:0008233;GO:0008234;GO:0016563;GO:0016787;GO:0016788;GO:0016790;GO:0019783;GO:0019784;GO:0030528;GO:0070011	transcription cofactor activity;transcription coactivator activity;catalytic activity;ubiquitin thiolesterase activity;ubiquitin-specific protease activity;binding;protein binding;transcription factor binding;peptidase activity;cysteine-type peptidase activity;transcription activator activity;hydrolase activity;hydrolase activity, acting on ester bonds;thiolester hydrolase activity;small conjugating protein-specific protease activity;NEDD8-specific protease activity;transcription regulator activity;peptidase activity, acting on L-amino acid peptides	GO:0006139;GO:0006325;GO:0006350;GO:0006355;GO:0006464;GO:0006508;GO:0006511;GO:0006996;GO:0008152;GO:0009056;GO:0009057;GO:0009058;GO:0009059;GO:0009889;GO:0009891;GO:0009893;GO:0009987;GO:0010468;GO:0010556;GO:0010557;GO:0010604;GO:0010628;GO:0016043;GO:0016568;GO:0016569;GO:0016570;GO:0016578;GO:0016579;GO:0019219;GO:0019222;GO:0019538;GO:0019941;GO:0030163;GO:0031323;GO:0031325;GO:0031326;GO:0031328;GO:0034645;GO:0034960;GO:0034961;GO:0034962;GO:0043170;GO:0043283;GO:0043284;GO:0043285;GO:0043412;GO:0043632;GO:0043687;GO:0044237;GO:0044238;GO:0044248;GO:0044249;GO:0044257;GO:0044260;GO:0044265;GO:0044267;GO:0045449;GO:0045893;GO:0045935;GO:0045941;GO:0048518;GO:0048522;GO:0050789;GO:0050794;GO:0051252;GO:0051254;GO:0051276;GO:0051603;GO:0060255;GO:0065007;GO:0070646;GO:0070647;GO:0080090	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;establishment or maintenance of chromatin architecture;transcription;regulation of transcription, DNA-dependent;protein modification process;proteolysis;ubiquitin-dependent protein catabolic process;organelle organization;metabolic process;catabolic process;macromolecule catabolic process;biosynthetic process;macromolecule biosynthetic process;regulation of biosynthetic process;positive regulation of biosynthetic process;positive regulation of metabolic process;cellular process;regulation of gene expression;regulation of macromolecule biosynthetic process;positive regulation of macromolecule biosynthetic process;positive regulation of macromolecule metabolic process;positive regulation of gene expression;cellular component organization;chromatin modification;covalent chromatin modification;histone modification;histone deubiquitination;protein deubiquitination;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;regulation of metabolic process;protein metabolic process;modification-dependent protein catabolic process;protein catabolic process;regulation of cellular metabolic process;positive regulation of cellular metabolic process;regulation of cellular biosynthetic process;positive regulation of cellular biosynthetic process;cellular macromolecule biosynthetic process;cellular biopolymer metabolic process;cellular biopolymer biosynthetic process;cellular biopolymer catabolic process;macromolecule metabolic process;biopolymer metabolic process;biopolymer biosynthetic process;biopolymer catabolic process;biopolymer modification;modification-dependent macromolecule catabolic process;post-translational protein modification;cellular metabolic process;primary metabolic process;cellular catabolic process;cellular biosynthetic process;cellular protein catabolic process;cellular macromolecule metabolic process;cellular macromolecule catabolic process;cellular protein metabolic process;regulation of transcription;positive regulation of transcription, DNA-dependent;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;positive regulation of transcription;positive regulation of biological process;positive regulation of cellular process;regulation of biological process;regulation of cellular process;regulation of RNA metabolic process;positive regulation of RNA metabolic process;chromosome organization;proteolysis involved in cellular protein catabolic process;regulation of macromolecule metabolic process;biological regulation;protein modification by small protein removal;protein modification by small protein conjugation or removal;regulation of primary metabolic process	mmu:30941			K11833	0.333946	0																0.333946	0	0.0187915	9.63	95.697						2	T	HLNRFSTSRGSIK	CAMK2;CHK1;CHK1/2;PKC;PKD	PKC	0.001764	0.0187915	9.63	95.697	_ILVLHLNRFS(ph)TSRGS(ph)IK_	ILVLHLNRFS(0.334)T(0.334)S(0.334)RGS(0.998)IK	ILVLHLNRFS(0)T(0)S(0)RGS(27.35)IK	11	2	1051.0396	-0.085171																			0.049226	0.049226																																																																																																																	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0		
