Parameter	Value
Version	1.0.12.31
Released	True
Peptide FDR	0.05
Max. peptide PEP	1
Protein FDR	0.01
Min. peptide Length	6
Min. unique peptides	2
Min. peptides	2
Reverse string	REV_
Contaminant string	CON_
Peptides used for protein quantitation	Razor
Min. ratio count	2
Number of threads	4
Re-quantify	True
Keep low-scoring versions of identified peptides	True
Fasta file	D:\SILAC\Database\ipi.MOUSE.v3.52.decoy.fasta
Experimental design file	D:\SILAC\Projects\NIH LRRK2 KD\combined\2nd.txt
Variable modifications	Oxidation (M);Acetyl (Protein N-term)
Fixed modifications	Carbamidomethyl (C)
Database	MQ_IPI_mouse
MS/MS tol.	0.5 Da
Username	karsten.boldt
Max. msm file size [MB]	350
Top MS/MS peaks per 100 Da.	6
SILAC type	doublets
