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Development of a stable lung microbiome in healthy neonatal mice.

Microb. Ecol. 75, 529-542 (2018)
Verlagsversion Forschungsdaten DOI PMC
Open Access Gold
The lower respiratory tract has been previously considered sterile in a healthy state, but advances in culture-independent techniques for microbial identification and characterization have revealed that the lung harbors a diverse microbiome. Although research on the lung microbiome is increasing and important questions were already addressed, longitudinal studies aiming to describe developmental stages of the microbial communities from the early neonatal period to adulthood are lacking. Thus, little is known about the early-life development of the lung microbiome and the impact of external factors during these stages. In this study, we applied a barcoding approach based on high-throughput sequencing of 16S ribosomal RNA gene amplicon libraries to determine age-dependent differences in the bacterial fraction of the murine lung microbiome and to assess potential influences of differing "environmental microbiomes" (simulated by the application of used litter material to the cages). We could clearly show that the diversity of the bacterial community harbored in the murine lung increases with age. Interestingly, bacteria belonging to the genera Delftia and Rhodococcus formed an age-independent core microbiome. The addition of the used litter material influenced the lung microbiota of young mice but did not significantly alter the community composition of adult animals. Our findings elucidate the dynamic nature of the early-life lung microbiota and its stabilization with age. Further, this study indicates that even slight environmental changes modulate the bacterial community composition of the lung microbiome in early life, whereas the lung microbes of adults demonstrate higher resilience towards environmental variations.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Schlagwörter 16s Rrna-based Barcoding ; Core Microbiome ; Delftia ; Murine Lung Microbiome ; Rhodococcus; Gradient Gel-electrophoresis; Early-life; Respiratory Microbiota; Intestinal Microbiota; Gut Microbiome; Immune-system; Bacterial; Diversity; Biodegradation; Stability
Sprache
Veröffentlichungsjahr 2018
Prepublished im Jahr 2017
HGF-Berichtsjahr 2017
ISSN (print) / ISBN 0095-3628
e-ISSN 1432-184X
Zeitschrift Microbial Ecology
Quellenangaben Band: 75, Heft: 2, Seiten: 529-542 Artikelnummer: , Supplement: ,
Verlag Springer
Verlagsort New York
Begutachtungsstatus Peer reviewed
POF Topic(s) 30202 - Environmental Health
30205 - Bioengineering and Digital Health
Forschungsfeld(er) Environmental Sciences
Lung Research
Enabling and Novel Technologies
PSP-Element(e) G-504700-002
G-501600-001
G-503800-001
Scopus ID 85029419010
PubMed ID 28905200
Erfassungsdatum 2017-09-26