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1.
Horvath, P. & Coscia, F.*: Spatial proteomics in translational and clinical research. Mol. Syst. Biol. 21, 526 - 530 (2025)
2.
Pietzner, M.* et al.: Machine learning-guided deconvolution of plasma protein levels. Mol. Syst. Biol., DOI: 10.1038/s44320-025-00158-6 (2025)
3.
Stock, M. et al.: Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data. Mol. Syst. Biol. 21, 214-230 (2025)
4.
Lobentanzer, S.* ; Rodriguez-Mier, P.* ; Bauer, S. & Saez-Rodriguez, J.*: Molecular causality in the advent of foundation models. Mol. Syst. Biol., DOI: 10.1038/s44320-024-00041-w (2024)
5.
Mitic, N.* et al.: Dissecting the spatiotemporal diversity of adult neural stem cells. Mol. Syst. Biol. 20, 321-337 (2024)
6.
Tomaz da Silva, P.* et al.: Cellular energy regulates mRNA degradation in a codon-specific manner. Mol. Syst. Biol. 20, 506-520 (2024)
7.
Lotfollahi, M. et al.: Predicting cellular responses to complex perturbations in high-throughput screens. Mol. Syst. Biol. 19:e11517 (2023)
8.
Polychronidou, M.* et al.: Single-cell biology: What does the future hold? Mol. Syst. Biol. 19:e11799 (2023)
9.
Thielert, M.* et al.: Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel. Mol. Syst. Biol. 19:e11503 (2023)
10.
Urban, L. et al.: Real-time genomics for One Health. Mol. Syst. Biol. 19:e11686 (2023)
11.
Brunner, A.D.* et al.: Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation. Mol. Syst. Biol. 18:e10798 (2022)
12.
Hersbach, B.A. et al.: Probing cell identity hierarchies by fate titration and collision during direct reprogramming. Mol. Syst. Biol. 18:e11129 (2022)
13.
Ibarra Del Rio, I.A. et al.: Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements. Mol. Syst. Biol. 18:e10473 (2022)
14.
Bergen, V. ; Soldatov, R.A.* ; Kharchenko, P.V.* & Theis, F.J.: RNA velocity-current challenges and future perspectives. Mol. Syst. Biol. 17:e10282 (2021)
15.
Molbay, M. ; Kolabas, Z.I. ; Todorov, M.I. ; Ohn, T.-L. & Ertürk, A.: A guidebook for DISCO tissue clearing. Mol. Syst. Biol. 17:e9807 (2021)
16.
Ostaszewski, M.* et al.: COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. Mol. Syst. Biol. 17:e10387 (2021)
17.
Ostaszewski, M.* et al.: COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021). Mol. Syst. Biol. 17:e10851 (2021)
18.
Türei, D.* et al.: Integrated intra- and intercellular signaling knowledge for multicellular omics analysis. Mol. Syst. Biol. 17:e9923 (2021)
19.
Fischer, D.S. ; Wu, Y. ; Schubert, B. & Theis, F.J.: Predicting antigen specificity of single T cells based on TCR CDR3 regions. Mol. Syst. Biol. 16:e9416 (2020)
20.
Eraslan, B.* et al.: Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues. Mol. Syst. Biol. 15:e8513 (2019)
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