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Open Access Green möglich sobald Postprint bei der ZB eingereicht worden ist.
RNASeqExpressionBrowser - a web interface to browse and visualize high-throughput expression data.
Bioinformatics 30, 2519-2520 (2014)
MOTIVATION: RNA-seq techniques generate massive amounts of expression data. Several pipelines (e.g. Tophat and Cufflinks) are broadly applied to analyse these data sets. However, accessing and handling the analytical output remains challenging for non-experts. RESULTS: We present the RNASeqExpressionBrowser, an open-source web interface that can be used to access the output from RNA-seq expression analysis packages in different ways as it allows browsing for genes by identifiers, annotations or sequence similarity. Gene expression information can be loaded as long as it is represented in a matrix like format. Additionally, data can be made available by setting up the tool on a public server. For demonstration purposes, we have set up a version providing expression information from the barley genome. AVAILABILITY: The source code and a show case are accessible at: http://mips.helmholtz-muenchen.de/plant/RNASeqExpressionBrowser/.
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Publikationstyp
Artikel: Journalartikel
Dokumenttyp
Wissenschaftlicher Artikel
Schlagwörter
Rna-seq; Tophat; Gene
ISSN (print) / ISBN
1367-4803
e-ISSN
1367-4811
Zeitschrift
Bioinformatics
Quellenangaben
Band: 30,
Heft: 17,
Seiten: 2519-2520
Verlag
Oxford University Press
Verlagsort
Oxford
Nichtpatentliteratur
Publikationen
Begutachtungsstatus
Peer reviewed