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Pal, M. ; Kind, J.* ; Torres-Padilla, M.E.

DamID to map genome-protein interactions in preimplantation mouse embryos.

In: Epigenetic Reprogramming During Mouse Embryogenesis. Berlin [u.a.]: Springer, 2021. 265-282 (Methods Mol. Biol. ; 2214)
DOI PMC
Open Access Green möglich sobald Postprint bei der ZB eingereicht worden ist.
Investigating the chromatin landscape of the early mammalian embryo is essential to understand how epigenetic mechanisms may direct reprogramming and cell fate allocation. Genome-wide analyses of the epigenome in preimplantation mouse embryos have recently become available, thanks to the development of low-input protocols. DNA adenine methyltransferase identification (DamID) enables the investigation of genome-wide protein-DNA interactions without the requirement of specific antibodies. Most importantly, DamID can be robustly applied to single cells. Here we describe the protocol for performing DamID in single oocytes and mouse preimplantation embryos, as well as single blastomeres, using a Dam-LaminB1 fusion to generate high-resolution lamina-associated domain (LAD) maps. This low-input method can be adapted for other proteins of interest to faithfully profile their genomic interaction, allowing us to interrogate the chromatin dynamics and nuclear organization during the early mammalian development.
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Publikationstyp Artikel: Sammelbandbeitrag/Buchkapitel
Schlagwörter Lads ; Low-input Damid ; Mouse Embryo ; Nuclear Organization ; Single-cell Genomics
Sprache englisch
Veröffentlichungsjahr 2021
HGF-Berichtsjahr 2021
ISSN (print) / ISBN 1064-3745
e-ISSN 1940-6029
Bandtitel Epigenetic Reprogramming During Mouse Embryogenesis
Zeitschrift Methods in Molecular Biology
Quellenangaben Band: 2214, Heft: , Seiten: 265-282 Artikelnummer: , Supplement: ,
Verlag Springer
Verlagsort Berlin [u.a.]
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Epigenetics and Stem Cells (IES)
POF Topic(s) 30204 - Cell Programming and Repair
Forschungsfeld(er) Stem Cell and Neuroscience
PSP-Element(e) G-506200-001
DOI 10.1007/978-1-0716-0958-3_18
Scopus ID 85091264315
PubMed ID 32944916
Erfassungsdatum 2021-03-22
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