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Koch, V. ; Holmberg, O. ; Spitzer, H. ; Schiefelbein, J.* ; Asani, B.* ; Hafner, M.* ; Theis, F.J.

Noise transfer for unsupervised domain adaptation of retinal OCT images.

Lect. Notes Comput. Sc. 13432 LNCS, 699-708 (2022)
Postprint DOI
Open Access Green
Optical coherence tomography (OCT) imaging from different camera devices causes challenging domain shifts and can cause a severe drop in accuracy for machine learning models. In this work, we introduce a minimal noise adaptation method based on a singular value decomposition (SVDNA) to overcome the domain gap between target domains from three different device manufacturers in retinal OCT imaging. Our method utilizes the difference in noise structure to successfully bridge the domain gap between different OCT devices and transfer the style from unlabeled target domain images to source images for which manual annotations are available. We demonstrate how this method, despite its simplicity, compares or even outperforms state-of-the-art unsupervised domain adaptation methods for semantic segmentation on a public OCT dataset. SVDNA can be integrated with just a few lines of code into the augmentation pipeline of any network which is in contrast to many state-of-the-art domain adaptation methods which often need to change the underlying model architecture or train a separate style transfer model. The full code implementation for SVDNA will be made available at https://github.com/ValentinKoch/SVDNA.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Korrespondenzautor
Schlagwörter Semantic Segmentation ; Style-transfer ; Unsupervised Domain Adaptation
ISSN (print) / ISBN 0302-9743
e-ISSN 1611-3349
Konferenztitel Medical Image Computing and Computer Assisted Intervention – MICCAI 2022
Zeitschrift Lecture Notes in Computer Science
Quellenangaben Band: 13432 LNCS, Heft: , Seiten: 699-708 Artikelnummer: , Supplement: ,
Verlag Springer
Verlagsort Berlin [u.a.]
Nichtpatentliteratur Publikationen
Institut(e) Institute of Computational Biology (ICB)
Institute of AI for Health (AIH)