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Ru, J. ; Khan Mirzaei, M. ; Xue, J. ; Peng, X. ; Deng, L.

ViroProfiler: A containerized bioinformatics pipeline for viral metagenomic data analysis.

Gut Microbes 15:2192522 (2023)
Verlagsversion DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
Bacteriophages play central roles in the maintenance and function of most ecosystems by regulating bacterial communities. Yet, our understanding of their diversity remains limited due to the lack of robust bioinformatics standards. Here we present ViroProfiler, an in-silico workflow for analyzing shotgun viral metagenomic data. ViroProfiler can be executed on a local Linux computer or cloud computing environments. It uses the containerization technique to ensure computational reproducibility and facilitate collaborative research. ViroProfiler is freely available at https://github.com/deng-lab/viroprofiler.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Korrespondenzautor
Schlagwörter Virome ; Bacteriophages ; Bioinformatics ; Metagenomics ; Microbiome
ISSN (print) / ISBN 1949-0976
e-ISSN 1949-0984
Zeitschrift Gut Microbes
Quellenangaben Band: 15, Heft: 1, Seiten: , Artikelnummer: 2192522 Supplement: ,
Verlag Landes Bioscience
Verlagsort 530 Walnut Street, Ste 850, Philadelphia, Pa 19106 Usa
Nichtpatentliteratur Publikationen
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Virology (VIRO)
Förderungen Marie Curie Actions (MSCA)
China Scholarship Council (CSC)
European Research Council
Marie Sklodowska-Curie Actions Innovation Training Networks
German Research Foundation (D.F.G. Emmy Noether program)