Thylakoid membranes coordinate the light reactions of photosynthesis
across multiple scales, coupling the architecture of an elaborate
membrane network to the spatial organization of individual protein
complexes embedded within this network. Previously, we used in situ cryo- electron tomography (cryo-ET) to reveal the native thylakoid architecture of the green alga Chlamydomonas reinhardtii [1] and then map the molecular organization of these thylakoids with single-molecule precision [2].
However, it remains to be shown how generalizable this green algal
blueprint is to the thylakoids of vascular plants, which possess
distinct membrane architecture subdivided into grana stacks
interconnected by non-stacked stromal lamellae. Here, we continue our
cryo-ET investigation to reveal the molecular architecture of thylakoids
within intact chloroplasts isolated from spinach (Spinacia oleracea).
We visualize the fine ultrastructural details of grana membranes, as
well as interactions between thylakoids and plastoglobules. We apply and
further develop AI-based computational approaches for automated
membrane segmentation and membrane protein picking [3],
enabling us to quantify the organization of photosynthetic complexes
within the plane of the thylakoid membrane and across adjacent stacked
membranes. Our analysis reveals that, despite different 3D architecture,
the molecular organization of thylakoid membranes in vascular plants
and green algae is strikingly similar. In contrast to isolated plant
thylakoids, where semi- crystalline arrays of photosystem II (PSII)
appear to hold some membranes together, we find in intact chloroplasts
that PSII is non-crystalline and has uniform concentration both within
the membrane plane and across stacked grana membranes. Similar to C. reinhardtii,
we observe strict lateral heterogeneity of PSII and PSI at the boundary
between appressed and non-appressed thylakoid domains, with no evidence
for a distinct grana margin region where these complexes have been
proposed to intermix. Based on these measurements, we support a simple
two-domain model for the molecular organization of thylakoid membranes
in both green algae and plants.