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81.
Georgii, E.* ; Dietmann, S. ; Uno, T.* ; Pagel, P. & Tsuda, K.*: Enumeration of condition-dependent dense modules in protein interaction networks. Bioinformatics 25, 933-940 (2009)
82.
Wägele, B. et al.: CRONOS: The cross-reference navigation server. Bioinformatics 25, 141-143 (2009)
83.
Kastenmüller, G. ; Gasteiger, J.* & Mewes, H.-W.: An environmental perspective on large-scale genome clustering based on metabolic capabilities. Bioinformatics 24, i56-i62 (2008)
84.
Schachtner, R.* et al.: Knowledge-based gene expression classification via matrix factorization. Bioinformatics 24, 1688-1697 (2008)
85.
Tetko, I.V. ; Rodchenkov, I. ; Walter, M.C. ; Rattei, T.* & Mewes, H.-W.: Beyond the 'best' match: Machine learning annotation of protein sequences by integration of different sources of information. Bioinformatics 24, 621-628 (2008)
86.
Krumsiek, J. ; Arnold, R. & Rattei, T.*: Gepard: A rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics 23, 1026-1028 (2007)
87.
Pagel, P. ; Oesterheld, M. ; Stuempflen, V. & Frishman, D.: The DIMA web resource-exploring the protein domain network. Bioinformatics 22, 997-998 (2006)
88.
Wang, Y. ; Hindemitt, T. & Mayer, K.F.X.: Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs. Bioinformatics 22, 2585-2589 (2006)
89.
Arnold, R. et al.: SIMAP - The similarity matrix of proteins. Bioinformatics 21, 42-46 (2005)
90.
Artamonova, I.I. ; Frishman, G. ; Gelfand, M.S.* & Frishman, D.: Mining sequence annotation databanks for association patterns. Bioinformatics 21, 3, 49-57 (2005)
91.
Friedel, C.C.* et al.: Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage. Bioinformatics 21, 1383-1388 (2005)
92.
Hindemitt, T. & Mayer, K.F.X.: CREDO: A web-based tool for computational detection of conserved sequence motifs in noncoding sequences. Bioinformatics 21, 4304-4306 (2005)
93.
Pagel, P. et al.: The MIPS mammalian protein-protein interaction database. Bioinformatics 21, 832-834 (2005)
94.
Tetko, I.V. et al.: MIPS bacterial genomes functional annotation benchmark dataset. Bioinformatics 21, 2520-2521 (2005)
95.
Wahl, M.B. ; Heinzmann, U. & Imai, K.: LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouse. Bioinformatics 21, 1393-1400 (2005)
96.
Wahl, M.B. ; Heinzmann, U. & Imai, K.: LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome. Bioinformatics 21, 1389-1392 (2005)
97.
Antonov, A.V. ; Tetko, I.V. ; Mader, M.T. ; Budczies, J. & Mewes, H.-W.: Optimization models for cancer classification: Extracting gene interaction information from microarray expression data. Bioinformatics 20, 644-652 (2004)
98.
Antonov, A.V. ; Tetko, I.V. ; Prokopenko, V.V.* ; Kosykh, D. & Mewes, H.-W.: Web portal for classification of expression data using maximal margin linear programming. Bioinformatics 20, 3284-3285 (2004)
99.
Crass, T.* et al.: The Helmholtz network for bioinformatics: An integrative web portal bioinformatics resources. Bioinformatics 20, 268-270 (2004)
100.
Müller, J.C. & Andreoli, C.: Plotting haplotype-specific linkage disequilibrium patterns by extended haplotype homozygosity. Bioinformatics 19, 786-787 (2003)
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