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Veerman, F.* ; Popović, N.* ; Marr, C.

Parameter inference with analytical propagators for stochastic models of autoregulated gene expression.

Int. J. Nonlinear Sci. 23, 565–577 (2022)
Verlagsversion DOI
Open Access Gold (Paid Option)
Stochastic gene expression in regulatory networks is conventionally modelled via the chemical master equation (CME). As explicit solutions to the CME, in the form of so-called propagators, are oftentimes not readily available, various approximations have been proposed. A recently developed analytical method is based on a separation of time scales that assumes significant differences in the lifetimes of mRNA and protein in the network, allowing for the efficient approximation of propagators from asymptotic expansions for the corresponding generating functions. Here, we showcase the applicability of that method to simulated data from a ‘telegraph’ model for gene expression that is extended with an autoregulatory mechanism. We demonstrate that the resulting approximate propagators can be applied successfully for parameter inference in the non-regulated model; moreover, we show that, in the extended autoregulated model, autoactivation or autorepression may be refuted under certain assumptions on the model parameters. These results indicate that our approach may allow for successful parameter inference and model identification from longitudinal single cell data.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Korrespondenzautor
Schlagwörter Asymptotic Analysis ; Parameter Inference ; Propagator ; Stochastic Gene Expression
ISSN (print) / ISBN 1749-3889
e-ISSN 1749-3897
Zeitschrift International Journal of Nonlinear Science
Quellenangaben Band: 23, Heft: 3-4, Seiten: 565–577 Artikelnummer: , Supplement: ,
Verlag World Academic Press
Verlagsort Genthiner Strasse 13, D-10785 Berlin, Germany
Nichtpatentliteratur Publikationen
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Computational Biology (ICB)
Förderungen Leverhulme Trust