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Tetko, I.V. ; Brauner, B. ; Dunger-Kaltenbach, I. ; Frishman, G. ; Montrone, C. ; Fobo, G. ; Ruepp, A. ; Antonov, A.V.

MIPS bacterial genomes functional annotation benchmark dataset.

Bioinformatics 21, 2520-2521 (2005)
Publ. Version/Full Text Volltext DOI PMC
Open Access Gold
Motivation: Any development of new methods for automatic functional annotation of proteins according to their sequences requires high-quality data (as benchmark) as well as tedious preparatory work to generate sequence parameters required as input data for the machine learning methods. Different program settings and incompatible protocols make a comparison of the analyzed methods difficult. Results: The MIPS Bacterial Functional Annotation Benchmark dataset (MIPS-BFAB) is a new, high-quality resource comprising four bacterial genomes manually annotated according to the MIPS functional catalogue (FunCat). These resources include precalculated sequence parameters, such as sequence similarity scores, InterPro domain composition and other parameters that could be used to develop and benchmark methods for functional annotation of bacterial protein sequences. These data are provided in XML format and can be used by scientists who are not necessarily experts in genome annotation.
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Publication type Article: Journal article
Document type Scientific Article
Keywords WHOLE GENOMES; CLASSIFICATION; PROTEINS
Language english
Publication Year 2005
HGF-reported in Year 2005
e-ISSN 1367-4811
Journal Bioinformatics
Quellenangaben Volume: 21, Issue: 10, Pages: 2520-2521 Article Number: , Supplement: ,
Publisher Oxford University Press
Publishing Place Oxford
Reviewing status Peer reviewed
Institute(s) Institute of Bioinformatics and Systems Biology (IBIS)
POF-Topic(s) 30505 - New Technologies for Biomedical Discoveries
Research field(s) Enabling and Novel Technologies
PSP Element(s) G-503700-001
PubMed ID 15769832
DOI 10.1093/bioinformatics/bti380
WOS ID 000229285600050
Scopus ID 21144439082
Erfassungsdatum 2005-12-01
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