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Spannagl, M. ; Nussbaumer, T. ; Bader, K.C. ; Martis, M.M. ; Seidel, M. ; Kugler, K.G. ; Gundlach, H. ; Mayer, K.F.X.

PGSB PlantsDB: Updates to the database framework for comparative plant genome research.

Nucleic Acids Res. 44, D1141-D1147 (2016)
Publ. Version/Full Text DOI PMC
Open Access Gold (Paid Option)
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PGSB (Plant Genome and Systems Biology: formerly MIPS) PlantsDB (http://pgsb.helmholtz-muenchen.de/plant/index.jsp) is a database framework for the comparative analysis and visualization of plant genome data. The resource has been updated with new data sets and types as well as specialized tools and interfaces to address user demands for intuitive access to complex plant genome data. In its latest incarnation, we have re-worked both the layout and navigation structure and implemented new keyword search options and a new BLAST sequence search functionality. Actively involved in corresponding sequencing consortia, PlantsDB has dedicated special efforts to the integration and visualization of complex triticeae genome data, especially for barley, wheat and rye. We enhanced CrowsNest, a tool to visualize syntenic relationships between genomes, with data from the wheat sub-genome progenitor Aegilops tauschii and added functionality to the PGSB RNASeqExpressionBrowser. GenomeZipper results were integrated for the genomes of barley, rye, wheat and perennial ryegrass and interactive access is granted through PlantsDB interfaces. Data exchange and cross-linking between PlantsDB and other plant genome databases is stimulated by the transPLANT project (http://transplantdb.eu/).
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Publication type Article: Journal article
Document type Scientific Article
Corresponding Author
Keywords Draft Genome; Evolution; Unlocking; Circle; Barley
ISSN (print) / ISBN 0305-1048
e-ISSN 1362-4962
Journal Nucleic Acids Research
Quellenangaben Volume: 44, Issue: D1, Pages: D1141-D1147 Article Number: , Supplement: ,
Publisher Oxford University Press
Publishing Place Oxford
Non-patent literature Publications
Reviewing status Peer reviewed
Institute(s) Research Unit Plant Genome and Systems Biology (PGSB)