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PGSB PlantsDB: Updates to the database framework for comparative plant genome research.
Nucleic Acids Res. 44, D1141-D1147 (2016)
PGSB (Plant Genome and Systems Biology: formerly MIPS) PlantsDB (http://pgsb.helmholtz-muenchen.de/plant/index.jsp) is a database framework for the comparative analysis and visualization of plant genome data. The resource has been updated with new data sets and types as well as specialized tools and interfaces to address user demands for intuitive access to complex plant genome data. In its latest incarnation, we have re-worked both the layout and navigation structure and implemented new keyword search options and a new BLAST sequence search functionality. Actively involved in corresponding sequencing consortia, PlantsDB has dedicated special efforts to the integration and visualization of complex triticeae genome data, especially for barley, wheat and rye. We enhanced CrowsNest, a tool to visualize syntenic relationships between genomes, with data from the wheat sub-genome progenitor Aegilops tauschii and added functionality to the PGSB RNASeqExpressionBrowser. GenomeZipper results were integrated for the genomes of barley, rye, wheat and perennial ryegrass and interactive access is granted through PlantsDB interfaces. Data exchange and cross-linking between PlantsDB and other plant genome databases is stimulated by the transPLANT project (http://transplantdb.eu/).
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Times Cited
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9.202
2.515
39
51
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
Draft Genome; Evolution; Unlocking; Circle; Barley
Language
english
Publication Year
2016
Prepublished in Year
2015
HGF-reported in Year
2015
ISSN (print) / ISBN
0305-1048
e-ISSN
1362-4962
Journal
Nucleic Acids Research
Quellenangaben
Volume: 44,
Issue: D1,
Pages: D1141-D1147
Publisher
Oxford University Press
Publishing Place
Oxford
Reviewing status
Peer reviewed
POF-Topic(s)
30202 - Environmental Health
Research field(s)
Environmental Sciences
PSP Element(s)
G-503500-002
PubMed ID
26527721
WOS ID
WOS:000371261700161
Scopus ID
84979609001
Erfassungsdatum
2015-11-05