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Wong, P. ; Walter, M. ; Lee, W. ; Mannhaupt, G. ; Münsterkötter, M. ; Mewes, H.-W. ; Adam, G.* ; Güldener, U.

FGDB: Revisiting the genome annotation of the plant pathogen Fusarium graminearum.

Nucleic Acids Res. 39, D637-D639 (2011)
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The MIPS Fusarium graminearum Genome Database (FGDB) was established as a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat, barley and maize. The current version of FGDB v3.1 provides information on the full manually revised gene set based on the Broad Institute assembly FG3 genome sequence. The results of gene prediction tools were integrated with the help of comparative data on related species to result in a set of 13.718 annotated protein coding genes. This rigorous approach involved adding or modifying gene models and represents a coding sequence gold standard for the genus Fusarium. The gene loci improvements results in 2461 genes which either are new or have different structures compared to the Broad Institute assembly 3 gene set. Moreover the database serves as a convenient entry point to explore expression data results and to obtain information on the Affymetrix GeneChip probe sets. The resource is accessible on http://mips.gsf.de/genre/proj/FGDB/.
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Publication type Article: Journal article
Document type Scientific Article
Keywords fungal genome annotation; Fusarium; plant pathogen; re-annotation
Language english
Publication Year 2011
Prepublished in Year 2010
HGF-reported in Year 2010
ISSN (print) / ISBN 0305-1048
e-ISSN 1362-4962
Journal Nucleic Acids Research
Quellenangaben Volume: 39, Issue: SUPPL. 1, Pages: D637-D639 Article Number: , Supplement: ,
Publisher Oxford University Press
Reviewing status Peer reviewed
Institute(s) Institute of Bioinformatics and Systems Biology (IBIS)
POF-Topic(s) 30505 - New Technologies for Biomedical Discoveries
Research field(s) Enabling and Novel Technologies
PSP Element(s) G-503700-001
PubMed ID 21051345
DOI 10.1093/nar/gkq1016
Scopus ID 78651291561
Erfassungsdatum 2010-12-31
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