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Application of parallel computing to speed up chemometrics for GC×GC-TOFMS based metabolic fingerprinting.

Talanta 83, 1289-1294 (2011)
DOI PMC
Open Access Green as soon as Postprint is submitted to ZB.
Parallel computing was tested regarding its ability to speed up chemometric operations for data analysis. A set of metabolic samples from a second hand smoke (SHS) experiment was analyzed with comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry (GC×GC-TOFMS). Data was further preprocessed and analyzed. The preprocessing step comprises background correction, smoothing and alignment of the chromatographic signal. Data analysis was performed by applying t-test and partial least squares projection to latent structures discriminant analysis (PLS-DA). The optimization of the algorithm for parallel computing led to a substantial increase in performance. Metabolic fingerprinting showed a discrimination of the samples and indicates a metabolic effect of SHS.
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Publication type Article: Journal article
Document type Scientific Article
Keywords Parallel computing; Chemometrics; Comprehensive two-dimensional gas chromatography; Metabolic fingerprinting
Language english
Publication Year 2011
HGF-reported in Year 2011
ISSN (print) / ISBN 0039-9140
e-ISSN 0039-9140
Journal Talanta
Quellenangaben Volume: 83, Issue: 4, Pages: 1289-1294 Article Number: , Supplement: ,
Publisher Elsevier
Reviewing status Peer reviewed
POF-Topic(s) 30202 - Environmental Health
Research field(s) Environmental Sciences
PSP Element(s) G-504500-001
PubMed ID 21215865
Scopus ID 79251594161
Erfassungsdatum 2010-09-16