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Open Access Green as soon as Postprint is submitted to ZB.
PGSB/MIPS plantsDB database framework for the integration and analysis of plant genome data.
Methods Mol. Biol. 1533, 33-44 (2017)
Plant Genome and Systems Biology (PGSB), formerly Munich Institute for Protein Sequences (MIPS) PlantsDB, is a database framework for the integration and analysis of plant genome data, developed and maintained for more than a decade now. Major components of that framework are genome databases and analysis resources focusing on individual (reference) genomes providing flexible and intuitive access to data. Another main focus is the integration of genomes from both model and crop plants to form a scaffold for comparative genomics, assisted by specialized tools such as the CrowsNest viewer to explore conserved gene order (synteny). Data exchange and integrated search functionality with/over many plant genome databases is provided within the transPLANT project.
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
Crowsnest Synteny Browser ; Genomezipper ; Plant Genome Database ; Plantsdb ; Transplant ; Triticeae Genomes
ISSN (print) / ISBN
1064-3745
e-ISSN
1940-6029
Conference Title
Plant Genomics Databases
Journal
Methods in Molecular Biology
Quellenangaben
Volume: 1533,
Pages: 33-44
Publisher
Springer
Publishing Place
Berlin [u.a.]
Reviewing status
Peer reviewed