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BioSankey: Visualization of microbial communities over time.
J. Integr. Bioinform. 15:20170063 (2018)
Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners.
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
Gene Expression ; Html ; Microbiome ; Sankey ; Visualization
Language
Publication Year
2018
HGF-reported in Year
2018
e-ISSN
1613-4516
Quellenangaben
Volume: 15,
Issue: 4,
Article Number: 20170063
Publisher
de Gruyter
Reviewing status
Peer reviewed
Institute(s)
Institute of Environmental Medicine (IEM)
POF-Topic(s)
30202 - Environmental Health
Research field(s)
Allergy
PSP Element(s)
G-503400-001
Scopus ID
85062870670
PubMed ID
29897884
Erfassungsdatum
2018-06-28