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Tanaka, T.* ; Antonio, B.A.* ; Kikuchi, S.* ; Matsumoto, T.* ; Nagamura, Y.* ; Numa, H.* ; Sakai, H.* ; Wu, J.* ; Itoh, T.* ; Sasaki, T.* ; Aono, R.* ; Fujii, Y.* ; Habara, T.* ; Harada, E.* ; Kanno, M.* ; Kawahara, Y.* ; Kawashima, H.* ; Kubooka, H.* ; Matsuya, A.* ; Nakaoka, H.* ; Saichi, N.* ; Sanbonmatsu, R.* ; Sato, Y.* ; Shinso, Y.* ; Suzuki, M.* ; Takeda, J.* ; Tanino, M.* ; Todokoro, F.* ; Yamaguchi, K.* ; Yamamoto, N.* ; Yamasaki, C.* ; Imanishi, T.* ; Okido, T.* ; Tada, M.* ; Ikeo, K.* ; Tateno, Y.* ; Gojobori, T.* ; Lin, YC.* ; Wei, F.J.* ; Hsing, Y.I.* ; Zhao, Q.* ; Han, B.* ; Kramer, M.R.* ; McCombie, R.W.* ; Lonsdale, D.* ; O'Donovan, C.C.* ; Whitfield, E.J.* ; Apweiler, R.* ; Koyanagi, K.O.* ; Khurana, J.P.* ; Raghuvanshi, S.* ; Singh, N.K.* ; Tyagi, A.K.* ; Haberer, G. ; Fujisawa, M.* ; Hosokawa, S.* ; Ito, Y.* ; Ikawa, H.* ; Shibata, M.* ; Yamamoto, M.* ; Bruskiewich, R.M.* ; Hoen, D.R.* ; Bureau, T.E.* ; Namiki, N.* ; Ohyanagi, H.* ; Sakai, Y.* ; Nobushima, S.* ; Sakata, K.* ; Barrero, R.A.* ; Souvorov, A.* ; Smith-White, B.* ; Tatusova, T.* ; An, S.* ; An, G.* ; Oota, S.* ; Fuks, G.* ; Messing, J.* ; Christie, K.R.* ; Lieberherr, D.* ; Kim, H.* ; Zuccolo, A.* ; Wing, R.A.* ; Nobuta, K.* ; Green, P.J.* ; Lu, C.* ; Meyers, B.C.* ; Chaparro, C.* ; Piegu, B.* ; Panaud, O.* ; Echeverria, M.* ; Rice Annotation Project (*)

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res. 36, D1028-D1033 (2008)
Publ. Version/Full Text Volltext DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. The RAP-DB is available at: http://rapdb.dna.affrc.go.jp/ and http://rapdb.lab.nig.ac.jp/.
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Publication type Article: Journal article
Document type Scientific Article
Corresponding Author
Keywords SATIVA SSP JAPONICA; DNA TAGGING LINES; T-DNA; ORYZA-SATIVA; FUNCTIONAL GENOMICS; INSERTIONAL MUTAGENESIS; ARABIDOPSIS-THALIANA; REVERSE GENETICS; GENERATION; SEQUENCE
ISSN (print) / ISBN 0305-1048
e-ISSN 1362-4962
Journal Nucleic Acids Research
Quellenangaben Volume: 36, Issue: SI, Pages: D1028-D1033 Article Number: , Supplement: ,
Publisher Oxford University Press
Non-patent literature Publications
Reviewing status Peer reviewed
Institute(s) Institute of Bioinformatics and Systems Biology (IBIS)