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Gepard: A rapid and sensitive tool for creating dotplots on genome scale.
Bioinformatics 23, 1026-1028 (2007)
Publ. Version/Full Text Volltext
DOI
PMC
Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to {Theta}(m*log n). A client–server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data.
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
AMINO ACID; SEQUENCES; PROTEINS
ISSN (print) / ISBN
1367-4803
e-ISSN
1367-4811
Journal
Bioinformatics
Quellenangaben
Volume: 23,
Issue: 8,
Pages: 1026-1028
Publisher
Oxford University Press
Publishing Place
Oxford
Non-patent literature
Publications
Reviewing status
Peer reviewed