Bi-allelic TECPR2 variants have been associated with a complex syndrome with features of both a neurodevelopmental and neurodegenerative disorder. Here, we provide a comprehensive clinical description and variant interpretation framework for this genetic locus. Through an international collaboration, we identified 17 individuals from 15 families with bi-allelic TECPR2-variants. We systemically reviewed clinical and molecular data from this cohort and 11 cases previously reported. Phenotypes were standardized using Human Phenotype Ontology terms. A cross-sectional analysis revealed global developmental delay/intellectual disability, muscular hypotonia, ataxia, hyporeflexia, respiratory infections and central/nocturnal hypopnea as core manifestations. A review of brain MRI scans demonstrated a thin corpus callosum in 52%. We evaluated 17 distinct variants. Missense variants in TECPR2 are predominantly located in the N- and C-terminal regions containing β-propeller repeats. Despite constituting nearly half of disease associated TECPR2 variants, classifying missense variants as (likely) pathogenic according to ACMG criteria remains challenging. We estimate a pathogenic variant carrier frequency of 1/1,221 in the general and 1/155 in the Jewish Ashkenazi populations. Based on clinical, neuroimaging and genetic data, we provide recommendations for variant reporting, clinical assessment, and surveillance/treatment of individuals with TECPR2-associated disorder. This sets the stage for future prospective natural history studies.
GrantsProjekt DEAL Bayer Foundation Deutsche Forschungsgemeinschaft (DFG) CureAP4 Foundation CureSPG50 Foundation Spastic Paraplegia Foundation Thrasher Research Fund Astellas Pharmaceutical Inc. MitoBridge Inc. US NIH National Human Genome Research Institute (NHGRI)/National Heart Lung and Blood Institute (NHLBI) NHGRI National Institute for Health Research NHS England Wellcome Trust Cancer Research UK Medical Research Council Baylor-Hopkins Center for Mendelian Genomics through National Human Genome Research Institute German National Academic Foundation