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Quantifying spatial position in a branched structure in immunostained mouse tissue sections.
STAR Protoc. 2:100806 (2021)
We have developed a protocol to quantify the position of a cell in a branched structure based on two-dimensional microscopy images of tissue sections. Biological branched structures include organs such as the lungs, kidneys, and pancreas. In these organs, cell fate has been correlated with position, based on a qualitative estimate. However, a quantitative means of evaluating the cell position has been lacking. With this protocol, the correlation between cell fate and cell position was measured in mouse embryonic pancreas. For complete details on the use and execution of this protocol, please refer to Nyeng et al. (2019).
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
Bioinformatics ; Cell Biology ; Microscopy
e-ISSN
2666-1667
Journal
STAR Protocols
Quellenangaben
Volume: 2,
Issue: 4,
Article Number: 100806
Non-patent literature
Publications
Reviewing status
Peer reviewed
Institute(s)
Institute of Transl. Stem Cell Research (ITS)