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Open Access Green as soon as Postprint is submitted to ZB.
The barley and wheat pan-genomes.
Methods Mol. Biol. 2443, 147-159 (2022)
To unlock the genetic potential in crops, multi-genome comparisons are an essential tool. Decreasing costs and improved sequencing technologies have democratized plant genome sequencing and led to a vast increase in the amount of available reference sequences on the one hand and enabled the assembly of even the largest and most complex and repetitive crops genomes such as wheat and barley. These developments have led to the era of pan-genomics in recent years. Pan-genome projects enable the definition of the core and dispensable genome for various crop species as well as the analysis of structural and functional variation and hence offer unprecedented opportunities for exploring and utilizing the genetic basis of natural variation in crops. Comparing, analyzing, and visualizing these multiple reference genomes and their diversity requires powerful and specialized computational strategies and tools.
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
Annotation ; Assembly ; Cereals ; Crops ; Genes ; Pav ; Pan-genome ; Polyploidy ; Reference Genome ; Repeats ; Sequencing
Language
english
Publication Year
2022
HGF-reported in Year
2022
ISSN (print) / ISBN
1064-3745
e-ISSN
1940-6029
Book Volume Title
Plant Bioinformatics
Journal
Methods in Molecular Biology
Quellenangaben
Volume: 2443,
Pages: 147-159
Publisher
Springer
Publishing Place
Berlin [u.a.]
Reviewing status
Peer reviewed
POF-Topic(s)
30202 - Environmental Health
Research field(s)
Environmental Sciences
PSP Element(s)
G-503500-002
Scopus ID
85123385821
PubMed ID
35037204
Erfassungsdatum
2022-06-07