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Walter, M.C. ; Rattei, T.* ; Arnold, R.* ; Güldener, U. ; Münsterkötter, M. ; Nenova, K. ; Kastenmüller, G. ; Tischler, P.* ; Wölling, A.* ; Volz, A.* ; Pongratz, N.* ; Jost, R.* ; Mewes, H.-W. ; Frishman, D.

Pedant covers all complete RefSeq genomes.

Nucleic Acids Res. 37, D408-D411 (2008)
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The PEDANT genome database provides exhaustive annotation of nearly 3000 publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins by a broad set of bioinformatics algorithms. In particular, all completely sequenced genomes from the NCBI's Reference Sequence collection (RefSeq) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of pre-calculated similarity information stored in the similarity matrix of proteins (SIMAP) database, making it possible to process newly sequenced genomes immediately as they become available. PEDANT is freely accessible to academic users at http://pedant.gsf.de. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.
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Publication type Article: Journal article
Document type Scientific Article
Keywords DATABASE; PROTEINS; SEQUENCE; PREDICTION; RESOURCE
Language english
Publication Year 2008
HGF-reported in Year 0
ISSN (print) / ISBN 0305-1048
e-ISSN 1362-4962
Journal Nucleic Acids Research
Quellenangaben Volume: 37, Issue: SI, Pages: D408-D411 Article Number: , Supplement: ,
Publisher Oxford University Press
Reviewing status Peer reviewed
Institute(s) Institute of Bioinformatics and Systems Biology (IBIS)
POF-Topic(s) 30505 - New Technologies for Biomedical Discoveries
Research field(s) Enabling and Novel Technologies
PSP Element(s) G-503700-001
PubMed ID 18940859
DOI 10.1093/nar/gkn749
WOS ID 000261906200074
Scopus ID 58149197598
Erfassungsdatum 2008-12-31
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