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Njaci, I.* ; Waweru, B.* ; Kamal, N. ; Muktar, M.S.* ; Fisher, D.* ; Gundlach, H. ; Muli, C.* ; Muthui, L.* ; Maranga, M.* ; Kiambi, D.* ; Maass, B.L.* ; Emmrich, P.M.F.* ; Domelevo Entfellner, J.B.* ; Spannagl, M. ; Chapman, M.A.* ; Shorinola, O.* ; Jones, C.S.*

Chromosome-level genome assembly and population genomic resource to accelerate orphan crop lablab breeding.

Nat. Commun. 14:1915 (2023)
Publ. Version/Full Text DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
Under-utilised orphan crops hold the key to diversified and climate-resilient food systems. Here, we report on orphan crop genomics using the case of Lablab purpureus (L.) Sweet (lablab) - a legume native to Africa and cultivated throughout the tropics for food and forage. Our Africa-led plant genome collaboration produces a high-quality chromosome-scale assembly of the lablab genome. Our assembly highlights the genome organisation of the trypsin inhibitor genes - an important anti-nutritional factor in lablab. We also re-sequence cultivated and wild lablab accessions from Africa confirming two domestication events. Finally, we examine the genetic and phenotypic diversity in a comprehensive lablab germplasm collection and identify genomic loci underlying variation of important agronomic traits in lablab. The genomic data generated here provide a valuable resource for lablab improvement. Our inclusive collaborative approach also presents an example that can be explored by other researchers sequencing indigenous crops, particularly from low and middle-income countries (LMIC).
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Publication type Article: Journal article
Document type Scientific Article
Keywords Purpureus L. Sweet; Read Alignment; Web Server; Hi-c; Sequence; Tool; Diversity; Protein; Transcriptome; Domestication
Language english
Publication Year 2023
HGF-reported in Year 2023
ISSN (print) / ISBN 2041-1723
e-ISSN 2041-1723
Journal Nature Communications
Quellenangaben Volume: 14, Issue: 1, Pages: , Article Number: 1915 Supplement: ,
Publisher Nature Publishing Group
Publishing Place London
Reviewing status Peer reviewed
Institute(s) Research Unit Plant Genome and Systems Biology (PGSB)
POF-Topic(s) 30202 - Environmental Health
Research field(s) Environmental Sciences
PSP Element(s) G-503500-002
Grants Bioinformatics Community of Practice training grant from UK Research and Innovation (UKRI)
SoCoBio DTP (BBSRC, UK)
German Federal Ministry of Education and Research (De.NBI)
Royal Society FLAIR award
CGIAR Fund Donors
DOI 10.1038/s41467-023-37489-7
WOS ID 000981184400001
Scopus ID 85152662784
PubMed ID 37069152
Erfassungsdatum 2023-10-06
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