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ViroProfiler: A containerized bioinformatics pipeline for viral metagenomic data analysis.
Gut Microbes 15:2192522 (2023)
Bacteriophages play central roles in the maintenance and function of most ecosystems by regulating bacterial communities. Yet, our understanding of their diversity remains limited due to the lack of robust bioinformatics standards. Here we present ViroProfiler, an in-silico workflow for analyzing shotgun viral metagenomic data. ViroProfiler can be executed on a local Linux computer or cloud computing environments. It uses the containerization technique to ensure computational reproducibility and facilitate collaborative research. ViroProfiler is freely available at https://github.com/deng-lab/viroprofiler.
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
Virome ; Bacteriophages ; Bioinformatics ; Metagenomics ; Microbiome
ISSN (print) / ISBN
1949-0976
e-ISSN
1949-0984
Journal
Gut Microbes
Quellenangaben
Volume: 15,
Issue: 1,
Article Number: 2192522
Publisher
Landes Bioscience
Publishing Place
530 Walnut Street, Ste 850, Philadelphia, Pa 19106 Usa
Non-patent literature
Publications
Reviewing status
Peer reviewed
Institute(s)
Institute of Virology (VIRO)
Grants
Marie Curie Actions (MSCA)
China Scholarship Council (CSC)
European Research Council
Marie Sklodowska-Curie Actions Innovation Training Networks
German Research Foundation (D.F.G. Emmy Noether program)
China Scholarship Council (CSC)
European Research Council
Marie Sklodowska-Curie Actions Innovation Training Networks
German Research Foundation (D.F.G. Emmy Noether program)