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A Roadmap for a consensus human skin cell atlas and single-cell data standardization.
J. Invest. Dermatol. 143, 1667-1677 (2023)
Single-cell technologies have become essential to driving discovery in both basic and translational investigative dermatology. Despite the multitude of available datasets, a central reference atlas of normal human skin, which can serve as a reference resource for skin cell types, cell states, and their molecular signatures, is still lacking. For any such atlas to receive broad acceptance, participation by many investigators during atlas construction is an essential prerequisite. As part of the Human Cell Atlas project, we have assembled a Skin Biological Network to build a consensus Human Skin Cell Atlas and outline a roadmap toward that goal. We define the drivers of skin diversity to be considered when selecting sequencing datasets for the atlas and list practical hurdles during skin sampling that can result in data gaps and impede comprehensive representation and technical considerations for tissue processing and computational analysis, the accounting for which should minimize biases in cell type enrichments and exclusions and decrease batch effects. By outlining our goals for Atlas 1.0, we discuss how it will uncover new aspects of skin biology.
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Publication type
Article: Journal article
Document type
Review
Keywords
United-states; Expression; Chromatin; Dedifferentiation; Differentiation; Architecture; Populations; Physiology; Diversity; Gender
ISSN (print) / ISBN
0022-202X
e-ISSN
1523-1747
Quellenangaben
Volume: 143,
Issue: 9,
Pages: 1667-1677
Publisher
Elsevier
Publishing Place
New York, NY
Non-patent literature
Publications
Reviewing status
Peer reviewed
Grants
National Institutes of Health
LEO Foundation
W.M. Keck Foundation
Chan Zuckerberg Initiative
National Science Foundation
Swedish Research Council
Swedish Cancer Society
Karolinska Institutet Consolidator
Austrian Science Fund
Wellcome Trust
California Institute for Regenerative Medicine training grant
Karolinska Institutet KID grant
European Union
Simons Foundation
UC Irvine Institute for Clinical and Translational Science
Forte
LEO Foundation
W.M. Keck Foundation
Chan Zuckerberg Initiative
National Science Foundation
Swedish Research Council
Swedish Cancer Society
Karolinska Institutet Consolidator
Austrian Science Fund
Wellcome Trust
California Institute for Regenerative Medicine training grant
Karolinska Institutet KID grant
European Union
Simons Foundation
UC Irvine Institute for Clinical and Translational Science
Forte