DNA methylation is an essential epigenetic chromatin modification, and its maintenance in mammals requires the protein UHRF1. It is yet unclear if UHRF1 functions solely by stimulating DNA methylation maintenance by DNMT1, or if it has important additional functions. Using degron alleles, we show that UHRF1 depletion causes a much greater loss of DNA methylation than DNMT1 depletion. This is not caused by passive demethylation as UHRF1-depleted cells proliferate more slowly than DNMT1-depleted cells. Instead, bioinformatics, proteomics and genetics experiments establish that UHRF1, besides activating DNMT1, interacts with DNMT3A and DNMT3B and promotes their activity. In addition, we show that UHRF1 antagonizes active DNA demethylation by TET2. Therefore, UHRF1 has non-canonical roles that contribute importantly to DNA methylation homeostasis; these findings have practical implications for epigenetics in health and disease.
GrantsCNRS Epigenetics and Cell Fate Unit Agence Nationale de la Recherche Fondation ARC (ARC labellisation program 2019) Institut National du Cancer Universit de Paris IdEx JSPS Overseas Research Fellowships Platform Project for Supporting Drug Discovery and Life Science Research (Basis for Supporting Innovative Drug Discovery and Life Science Research (BINDS)) from AMED Deutsche Forschungsgemeinschaft Foundation DFG Cell and Tissue Imaging (PICT-IBiSA) Institut Curie Region Ile-de-France Fondation Bettencourt Schueller Agence Nationale de la Recherche (French National Research Agency)