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Perez, G.* ; Barber, G.P.* ; Benet-Pages, A. ; Casper, J.* ; Clawson, H.* ; Diekhans, M.* ; Fischer, C.* ; Gonzalez, J.N.* ; Hinrichs, A.S.* ; Lee, C.M.* ; Nassar, L.R.* ; Raney, B.J.* ; Speir, M.L.* ; van Baren, M.J.* ; Vaske, C.J.* ; Haussler, D.* ; Kent, W.J.* ; Haeussler, M.*

The UCSC Genome Browser database: 2025 update.

Nucleic Acids Res., DOI: 10.1093/nar/gkae974 (2024)
Publ. Version/Full Text DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
The UCSC Genome Browser (https://genome.ucsc.edu) is a widely utilized web-based tool for visualization and analysis of genomic data, encompassing over 4000 assemblies from diverse organisms. Since its release in 2001, it has become an essential resource for genomics and bioinformatics research. Annotation data available on Genome Browser includes both internally created and maintained tracks as well as custom tracks and track hubs provided by the research community. This last year's updates include over 25 new annotation tracks such as the gnomAD 4.1 track on the human GRCh38/hg38 assembly, the addition of three new public hubs, and significant expansions to the Genome Archive[GenArk) system for interacting with the enormous variety of assemblies. We have also made improvements to our interface, including updates to the browser graphic page, such as a new popup dialog feature that now displays item details without requiring navigation away from the main Genome Browser page. GenePred tracks have been upgraded with right-click options for zooming and precise navigation, along with enhanced mouseOver functions. Additional improvements include a new grouping feature for track hubs and hub description info links. A new tutorial focusing on Clinical Genetics has also been added to the UCSC Genome Browser.
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Publication type Article: Journal article
Document type Scientific Article
Language english
Publication Year 2024
HGF-reported in Year 2024
ISSN (print) / ISBN 0305-1048
e-ISSN 1362-4962
Journal Nucleic Acids Research
Publisher Oxford University Press
Publishing Place Great Clarendon St, Oxford Ox2 6dp, England
Reviewing status Peer reviewed
Institute(s) Institute of Neurogenomics (ING)
POF-Topic(s) 30205 - Bioengineering and Digital Health
Research field(s) Genetics and Epidemiology
PSP Element(s) G-503200-001
Grants U.S. Department of Health and Human Services
National Institute of Mental Health
NIH Office of the Director
California Department of Public Health
California Institute for Regenerative Medicine
Centers for Disease Control and Prevention
National Human Genome Research Institute
DOI 10.1093/nar/gkae974
WOS ID 001342481500001
PubMed ID 39460617
Erfassungsdatum 2024-10-30
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