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Troisi, R.* ; Rullo, R.* ; Napolitano, V. ; Popowicz, G.M. ; De Vendittis, E.* ; Sica, F.*

The binding of 3-O-methylfluorescein phosphate to the catalytic domain of the human CDC25B phosphatase: A structural investigation.

ChemBioChem 27:e202600010 (2026)
Publ. Version/Full Text Research data DOI PMC
Open Access Hybrid
Creative Commons Lizenzvertrag
The molecular mechanisms by which the human CDC25B activates the CDK1/cyclin B complex in the cell cycle, as well as how it can be inhibited by synthetic inhibitors at the atomic level, are still under investigation. Valuable insights have been gained from the molecular structure here-described, which captures for the first time the interaction between the C-terminal domain of the inactive mutant CDC25B C473S (CDC25B-S) and the commonly used synthetic substrate 3-O-methylfluorescein phosphate (3-OMFP). Crystallographic studies reveal that 3-OMFP engages multiple residues within the active site and the adjacent "swimming pool" of CDC25B-S, establishing specific interactions and prompting local adjustments in this region. These structural features explain the increased resistance to thermal denaturation of CDC25B-S observed through circular dichroism measurements upon substrate binding. The structural changes induced by 3-OMFP lead to a conformation comparable to that of CDC25A bound to its substrate, the CDK2/cyclin A complex. These findings qualify 3-OMFP as a promising starting model for the rational design of selective competitive inhibitors of CDC25B having reduced off-target effects.
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Publication type Article: Journal article
Document type Scientific Article
Keywords 3‐omfp ; Cdc25b ; Crystal Structure ; Ligand Binding ; Structural Basis For Inhibitor Design; Dual-specificity Phosphatases; Cell-cycle Control; Crystal-structure; Phase-transition; In-vitro; Inhibition; Discovery; Dynamics; Docking; Kinases
ISSN (print) / ISBN 1439-4227
e-ISSN 1439-7633
Journal ChemBioChem
Quellenangaben Volume: 27, Issue: 7, Pages: , Article Number: e202600010 Supplement: ,
Publisher Wiley
Publishing Place Postfach 101161, 69451 Weinheim, Germany
Reviewing status Peer reviewed
Grants European Synchrotron Radiation Facility (ESRF)