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MassTRIX reloaded: Combined analysis and visualization of transcriptome and metabolome data.
PLoS ONE 7:e39860 (2012)
Systems Biology is a field in biological science that focuses on the combination of several or all "omics"-approaches in order to find out how genes, transcripts, proteins and metabolites act together in the network of life. Metabolomics as analog to genomics, transcriptomics and proteomics is more and more integrated into biological studies and often transcriptomic and metabolomic experiments are combined in one setup. At a first glance both data types seem to be completely different, but both produce information on biological entities, either transcripts or metabolites. Both types can be overlaid on metabolic pathways to obtain biological information on the studied system. For the joint analysis of both data types the MassTRIX webserver was updated. MassTRIX is freely available at www.masstrix.org.
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Publication type
Article: Journal article
Document type
Scientific Article
Keywords
SPECTROMETRY; PATHWAYS; MAPS; KEGG
Language
english
Publication Year
2012
HGF-reported in Year
2012
ISSN (print) / ISBN
1932-6203
Journal
PLoS ONE
Quellenangaben
Volume: 7,
Issue: 7,
Article Number: e39860
Publisher
Public Library of Science (PLoS)
Publishing Place
Lawrence, Kan.
Reviewing status
Peer reviewed
Institute(s)
Institute of Bioinformatics and Systems Biology (IBIS)
Research Unit BioGeoChemistry and Analytics (BGC)
Research Unit BioGeoChemistry and Analytics (BGC)
POF-Topic(s)
30505 - New Technologies for Biomedical Discoveries
30202 - Environmental Health
30202 - Environmental Health
Research field(s)
Enabling and Novel Technologies
Environmental Sciences
Environmental Sciences
PSP Element(s)
G-503700-001
G-504800-001
G-504800-001
PubMed ID
22815716
WOS ID
WOS:000306461800023
Scopus ID
84863676402
Erfassungsdatum
2012-08-30