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1.
El Nahhas, O.S.M.* et al.: From whole-slide image to biomarker prediction: End-to-end weakly supervised deep learning in computational pathology. Nat. Protoc., DOI: 10.1038/s41596-024-01047-2 (2024)
2.
Müller, A. et al.: Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets. Nat. Protoc., DOI: 10.1038/s41596-024-00957-5 (2024)
3.
Cai, R. et al.: Whole-mouse clearing and imaging at the cellular level with vDISCO. Nat. Protoc. 18, 1197-1242 (2023)
4.
Collins, A.* et al.: Measuring DNA modifications with the comet assay: A compendium of protocols. Nat. Protoc. 18, 929-989 (2023)
5.
Fischer, A. et al.: In vivo fluorescent labeling and tracking of extracellular matrix. Nat. Protoc. 18, 2876-2890 (2023)
6.
Müller, P.* et al.: High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities. Nat. Protoc., 38 (2023)
7.
Prudente de Mello, N. ; Fecher, C.* ; Pastor, A.M.* ; Perocchi, F. & Misgeld, T.*: Ex vivo immunocapture and functional characterization of cell-type-specific mitochondria using MitoTag mice. Nat. Protoc. 18, 2181-2220 (2023)
8.
Mai, H. et al.: Scalable tissue labeling and clearing of intact human organs. Nat. Protoc. 17, 2188-2215 (2022)
9.
Brix, N.* ; Samaga, D. ; Belka, C. ; Zitzelsberger, H. & Lauber, K.: Analysis of clonogenic growth in vitro. Nat. Protoc. 16, 4963-4991 (2021)
10.
Weisheit, I.* et al.: Simple and reliable detection of CRISPR-induced on-target effects by qgPCR and SNP genotyping. Nat. Protoc. 16, 1714-1739 (2021)
11.
Yépez, V.A.* et al.: Detection of aberrant gene expression events in RNA sequencing data. Nat. Protoc. 16, 1276–1296 (2021)
12.
Hagn, F. ; Nasr, M.L.* & Wagner, G.*: Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR. Nat. Protoc. 13, 79-98 (2018)
13.
Barbosa, J.S. ; di Giaimo, R.* ; Götz, M. & Ninkovic, J.: Single-cell in vivo imaging of adult neural stem cells in the zebrafish telencephalon. Nat. Protoc. 11, 1360-1370 (2016)
14.
Ly, A. et al.: High-mass-resolution MALDI mass spectrometry imaging of metabolites from formalin-fixed paraffin-embedded tissue. Nat. Protoc. 11, 1428-1443 (2016)
15.
Winkler, T.W.* et al.: Quality control and conduct of genome-wide association meta-analyses. Nat. Protoc. 9, 1192-1212 (2014)
16.
Desbordes, S.C. & Studer, L.*: Adapting human pluripotent stem cells to high-throughput and high-content screening. Nat. Protoc. 8, 111-130 (2013)
17.
Wefers, B. et al.: Generation of targeted mouse mutants by embryo microinjection of TALEN mRNA. Nat. Protoc. 8, 2355-2379 (2013)
18.
Fischer, J. et al.: Prospective isolation of adult neural stem cells from the mouse subependymal zone. Nat. Protoc. 6, 1981-1989 (2011)
19.
Heinrich, C.* et al.: Generation of subtype-specific neurons from postnatal astroglia of the mouse cerebral cortex. Nat. Protoc. 6, 214-228 (2011)
20.
Ortega, F.* et al.: Using an adherent cell culture of the mouse subependymal zone to study the behavior of adult neural stem cells on a single-cell level. Nat. Protoc. 6, 1847-1859 (2011)
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