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Mathew, L.S.* ; Seidel, M. ; George, B.* ; Mathew, S.* ; Spannagl, M. ; Haberer, G. ; Torres, M.F.* ; Al-Dous, E.K.* ; Al-Azwani, E.K.* ; Diboun, I.* ; Krueger, R.R.* ; Mayer, K.F.X. ; Mohamoud, Y.A.* ; Suhre, K. ; Malek, J.A.*

A genome-wide survey of date palm cultivars supports two major subpopulations in Phoenix dactylifera.

Genes Genomes Genetics G3 5, 1429-1438 (2015)
Verlagsversion Postprint DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
The date palm (Phoenix dactylifera L.) is one of the oldest cultivated trees and is intimately tied to the history of human civilization. There are hundreds of commercial cultivars with distinct fruit shapes, colors and sizes growing mainly in arid lands from the west of North Africa to India. The origin of date palm domestication is still uncertain and few studies have attempted to document genetic diversity across multiple regions. We conducted genotyping-by-sequencing on 70 female cultivar samples from across the date palm-growing regions, including four Phoenix species as outgroup. Here, for the first time we generate genome-wide genotyping data for 13,000 - 65,000 SNPs in a diverse set of date palm fruit and leaf samples. Our analysis provides the first genome-wide evidence confirming recent findings that the date palm cultivars segregate into two main regions of shared genetic background from North Africa and the Arabian Gulf. We identify genomic regions with high densities of geographically segregating SNPs and also observe higher levels of allele fixation on the recently described X-chromosome than on the autosomes. Our results fit a model with two centers of earliest cultivation including date palms autochthonous to North Africa. These results adjust our understanding of human agriculture history and will provide the foundation for more directed functional studies and a better understanding of genetic diversity in date palm.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Schlagwörter Date Palm ; Domestication ; Genotyping-by-sequencing ; Plant Sex Chromosomes ; Population Genetics; Population-structure; Genetic Diversity; Microsatellite Markers; L.; Domestication; Evolution; Insights; Reveals; History; Origin
Sprache englisch
Veröffentlichungsjahr 2015
HGF-Berichtsjahr 2015
ISSN (print) / ISBN 2160-1836
e-ISSN 2160-1836
Zeitschrift Genes Genomes Genetics G3
Quellenangaben Band: 5, Heft: 7, Seiten: 1429-1438 Artikelnummer: , Supplement: ,
Verlag Genetics Society of America
Verlagsort Pittsburgh, PA
Begutachtungsstatus Peer reviewed
Institut(e) Research Unit Plant Genome and Systems Biology (PGSB)
Institute of Bioinformatics and Systems Biology (IBIS)
POF Topic(s) 30202 - Environmental Health
30505 - New Technologies for Biomedical Discoveries
Forschungsfeld(er) Environmental Sciences
Enabling and Novel Technologies
PSP-Element(e) G-503500-002
G-503700-001
PubMed ID 25957276
DOI 10.1534/g3.115.018341
WOS ID WOS:000357951500012
Scopus ID 84937597856
Erfassungsdatum 2015-05-11
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