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Vieira Braga, F.A.* ; Kar, G.* ; Berg, M.* ; Carpaij, O.A.* ; Polanski, K.* ; Simon, L. ; Brouwer, S.* ; Gomes, T.* ; Hesse, L.* ; Jiang, J.* ; Fasouli, E.S.* ; Efremova, M.* ; Vento-Tormo, R.* ; Talavera-López, C.* ; Jonker, M.R.* ; Affleck, K.* ; Palit, S. ; Strzelecka, P.M.* ; Firth, H.V.* ; Mahbubani, K.T.* ; Cvejic, A.* ; Meyer, K.B.* ; Saeb-Parsy, K.* ; Luinge, M.* ; Brandsma, C.A.* ; Timens, W.* ; Angelidis, I. ; Strunz, M. ; Koppelman, G.H.* ; van Oosterhout, A.J.* ; Schiller, H. B. ; Theis, F.J. ; van den Berge, M.* ; Nawijn, M.C.* ; Teichmann, S.A.*

A cellular census of human lungs identifies novel cell states in health and in asthma.

Nat. Med. 25, 1153-1163 (2019)
Postprint Forschungsdaten DOI PMC
Open Access Green
Human lungs enable efficient gas exchange and form an interface with the environment, which depends on mucosal immunity for protection against infectious agents. Tightly controlled interactions between structural and immune cells are required to maintain lung homeostasis. Here, we use single-cell transcriptomics to chart the cellular landscape of upper and lower airways and lung parenchyma in healthy lungs, and lower airways in asthmatic lungs. We report location-dependent airway epithelial cell states and a novel subset of tissue-resident memory T cells. In the lower airways of patients with asthma, mucous cell hyperplasia is shown to stem from a novel mucous ciliated cell state, as well as goblet cell hyperplasia. We report the presence of pathogenic effector type 2 helper T cells (T(H)2) in asthmatic lungs and find evidence for type 2 cytokines in maintaining the altered epithelial cell states. Unbiased analysis of cell-cell interactions identifies a shift from airway structural cell communication in healthy lungs to a T(H)2-dominated interactome in asthmatic lungs.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Schlagwörter Epithelial-cells; Prostaglandin D-2; Rna-seq; Expression; Inflammation; Pathogenesis; Macrophages; Phenotype; Disease; Gene
Sprache englisch
Veröffentlichungsjahr 2019
HGF-Berichtsjahr 2019
ISSN (print) / ISBN 1078-8956
e-ISSN 1546-170X
Zeitschrift Nature medicine
Quellenangaben Band: 25, Heft: 7, Seiten: 1153-1163 Artikelnummer: , Supplement: ,
Verlag Nature Publishing Group
Verlagsort New York, NY
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Computational Biology (ICB)
German Center for Lung Research (DZL)
POF Topic(s) 30205 - Bioengineering and Digital Health
80000 - German Center for Lung Research
Forschungsfeld(er) Enabling and Novel Technologies
Lung Research
PSP-Element(e) G-503800-001
G-501800-810
DOI 10.1038/s41591-019-0468-5
WOS ID WOS:000474430400030
Scopus ID 85067892275
PubMed ID 31209336
Erfassungsdatum 2019-06-26
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