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Grosche, S.* ; Marenholz, I.* ; Esparza-Gordillo, J.* ; Arnau-Soler, A.* ; Pairo-Castineira, E.* ; Rüschendorf, F.* ; Ahluwalia, T.S.* ; Almqvist, C.* ; Arnold, A.* ; Baurecht, H.* ; Bisgaard, H.* ; Bønnelykke, K.* ; Brown, S.J.* ; Bustamante, M.* ; Curtin, J.A.* ; Custovic, A.* ; Dharmage, S.C.* ; Esplugues, A.* ; Falchi, M.* ; Fernandez-Orth, D.* ; Ferreira, M.A.R.* ; Franke, A.* ; Gerdes, S.* ; Gieger, C. ; Hakonarson, H.* ; Holt, P.G.* ; Homuth, G.* ; Hubner, N.* ; Hysi, P.G.* ; Jarvelin, M.R.* ; Karlsson, R.* ; Koppelman, G.H.* ; Lau, S.* ; Lutz, M. ; Magnusson, P.K.E.* ; Marks, G.B.* ; Müller-Nurasyid, M. ; Nöthen, M.M.* ; Paternoster, L.* ; Pennell, C.E.* ; Peters, A. ; Rawlik, K.* ; Robertson, C.F.* ; Rodriguez, E.* ; Sebert, S.* ; Simpson, A.* ; Sleiman, P.M.A.* ; Standl, M. ; Stölzl, D.* ; Strauch, K. ; Szwajda, A.* ; Tenesa, A.* ; Thompson, P.J.* ; Ullemar, V.* ; Visconti, A.* ; Vonk, J.M.* ; Wang, C.A.* ; Weidinger, S.* ; Wielscher, M.* ; Worth, C.L.* ; Xu, C.J.* ; Lee, Y.A.*

Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.

Nat. Commun. 12:6618 (2021)
Verlagsversion DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
Previous genome-wide association studies revealed multiple common variants involved in eczema but the role of rare variants remains to be elucidated. Here, we investigate the role of rare variants in eczema susceptibility. We meta-analyze 21 study populations including 20,016 eczema cases and 380,433 controls. Rare variants are imputed with high accuracy using large population-based reference panels. We identify rare exonic variants in DUSP1, NOTCH4, and SLC9A4 to be associated with eczema. In DUSP1 and NOTCH4 missense variants are predicted to impact conserved functional domains. In addition, five novel common variants at SATB1-AS1/KCNH8, TRIB1/LINC00861, ZBTB1, TBX21/OSBPL7, and CSF2RB are discovered. While genes prioritized based on rare variants are significantly up-regulated in the skin, common variants point to immune cell function. Over 20% of the single nucleotide variant-based heritability is attributable to rare and low-frequency variants. The identified rare/low-frequency variants located in functional protein domains point to promising targets for novel therapeutic approaches to eczema.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Schlagwörter Genome-wide Association; Atopic-dermatitis; Susceptibility Loci; Risk Loci; Disease; Metaanalysis; Sequence; Asthma; Keratinocytes; Phosphatase
Sprache englisch
Veröffentlichungsjahr 2021
HGF-Berichtsjahr 2021
ISSN (print) / ISBN 2041-1723
e-ISSN 2041-1723
Zeitschrift Nature Communications
Quellenangaben Band: 12, Heft: 1, Seiten: , Artikelnummer: 6618 Supplement: ,
Verlag Nature Publishing Group
Verlagsort London
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Epidemiology (EPI)
Institute of Genetic Epidemiology (IGE)
POF Topic(s) 30202 - Environmental Health
30501 - Systemic Analysis of Genetic and Environmental Factors that Impact Health
Forschungsfeld(er) Genetics and Epidemiology
PSP-Element(e) G-504091-004
G-504100-001
G-504000-010
G-504000-008
Förderungen Projekt DEAL
DOI 10.1038/s41467-021-26783-x
WOS ID WOS:000719546000023
Scopus ID 85119420008
PubMed ID 34785669
Erfassungsdatum 2021-11-30
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