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Witting, M. ; Malik, A.* ; Leach, A.* ; Bridge, A.* ; Aimo, L.* ; Conroy, M.J.* ; O'Donnell, V.B.* ; Hoffmann, N.* ; Kopczynski, D.* ; Giacomoni, F.* ; Paulhe, N.* ; Gassiot, A.C.* ; Poupin, N.* ; Jourdan, F.* ; Bertrand-Michel, J.*

Challenges and perspectives for naming lipids in the context of lipidomics.

Metabolomics 20:15 (2024)
Verlagsversion DOI PMC
Open Access Hybrid
Creative Commons Lizenzvertrag
INTRODUCTION: Lipids are key compounds in the study of metabolism and are increasingly studied in biology projects. It is a very broad family that encompasses many compounds, and the name of the same compound may vary depending on the community where they are studied. OBJECTIVES: In addition, their structures are varied and complex, which complicates their analysis. Indeed, the structural resolution does not always allow a complete level of annotation so the actual compound analysed will vary from study to study and should be clearly stated. For all these reasons the identification and naming of lipids is complicated and very variable from one study to another, it needs to be harmonized. METHODS & RESULTS: In this position paper we will present and discuss the different way to name lipids (with chemoinformatic and semantic identifiers) and their importance to share lipidomic results. CONCLUSION: Homogenising this identification and adopting the same rules is essential to be able to share data within the community and to map data on functional networks.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Review
Schlagwörter Anotation ; Identification ; Interoperability ; Lipidomic; Chemical Entities; Knowledgebase; Annotation; Database
Sprache englisch
Veröffentlichungsjahr 2024
HGF-Berichtsjahr 2024
ISSN (print) / ISBN 1573-3882
e-ISSN 1573-3890
Zeitschrift Metabolomics
Quellenangaben Band: 20, Heft: 1, Seiten: , Artikelnummer: 15 Supplement: ,
Verlag Springer
Verlagsort New York, NY
Begutachtungsstatus Peer reviewed
Institut(e) CF Metabolomics & Proteomics (CF-MPC)
Helmholtz AI - FZJ (HAI - FZJ)
POF Topic(s) 30505 - New Technologies for Biomedical Discoveries
Forschungsfeld(er) Enabling and Novel Technologies
PSP-Element(e) A-630710-001
Förderungen MetaboHUB (French National Infrastructure for Metabolomics and Fluxomics MetaboHUB-ANR-11-INBS-0010)
COST EPILIPIDNET
DOI 10.1007/s11306-023-02075-x
WOS ID 001148932000001
Scopus ID 85183052612
PubMed ID 38267595
Erfassungsdatum 2024-01-29
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