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Antonov, A.V. ; Schmidt, E.E.* ; Dietmann, S. ; Krestyaninova, M.* ; Hermjakob, H.*

R spider: A network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.

Nucleic Acids Res. 38, 2, W78-W83 (2010)
Verlagsversion Volltext DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
R spider is a web-based tool for the analysis of a gene list using the systematic knowledge of core pathways and reactions in human biology accumulated in the Reactome and KEGG databases. R spider implements a network-based statistical framework, which provides a global understanding of gene relations in the supplied gene list, and fully exploits the Reactome and KEGG knowledge bases. R spider provides a user-friendly dialog-driven web interface for several model organisms and supports most available gene identifiers. R spider is freely available at http://mips.helmholtz-muenchen.de/proj/rspider.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Korrespondenzautor
Schlagwörter High-throughput data; Expression data; onto-tolls; Knowledgebase; Proteomics; Genomes
ISSN (print) / ISBN 0305-1048
e-ISSN 1362-4962
Zeitschrift Nucleic Acids Research
Quellenangaben Band: 38, Heft: SUPPL. 2, Seiten: W78-W83, Artikelnummer: , Supplement: 2
Verlag Oxford University Press
Nichtpatentliteratur Publikationen
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Bioinformatics and Systems Biology (IBIS)