PuSH - Publication Server of Helmholtz Zentrum München: The UCSC genome browser database: 2023 update.

Information

Clues to quality of journals

Open Access Policy of Helmholtz Association 2016

CC Licencences

Publication Metrics

Navigation

Home

Deutsch

EVA: Electronic Publishing

New EVA Application

Research

Advanced Search

Browse by ...

... HMGU-Authors/Consortia

... Organizational Structure

... Journal

... Publication Type

... Research Data

... Arbeitsgruppen

... Publication Year

Publication overview

Statistics

Statistics (last 5 years)

OA Publications

Publish

Submit Publication

Import publication from...

...EVA

Report missing publication

Highlights

Support & Contact

Contact persons

Help

Data protection

Helmholtz Open Science

JANE Journal Estimator

SHERPA/RoMEO

DOAJ

Export:

Text

Endnote (RIS) BIB

BibTeX

Nassar, L.R.* ; Barber, G.P.* ; Benet-Pages, A. ; Casper, J.* ; Clawson, H.* ; Diekhans, M.* ; Fischer, C.* ; Gonzalez, J.N.* ; Hinrichs, A.S.* ; Lee, B.T.* ; Lee, C.M.* ; Muthuraman, P.* ; Nguy, B.* ; Pereira, T.* ; Nejad, P.* ; Perez, G.* ; Raney, B.J.* ; Schmelter, D.* ; Speir, M.L.* ; Wick, B.D.* ; Zweig, A.S.* ; Haussler, D.* ; Kuhn, R.M.* ; Haeussler, M.* ; Kent, W.J.*

The UCSC genome browser database: 2023 update.

Nucleic Acids Res. 51, D1188–D1195 (2023)

Publ. Version/Full Text

Research data

DOI

PMC

	Open Access Gold

Abstract
Metrics
Extra information

The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, and general bioinformatics resource that continues to serve the community as it enters its 23rd year. This year has seen an emphasis in clinical data, with new tracks and an expanded Recommended Track Sets feature on hg38 as well as the addition of a single cell track group. SARS-CoV-2 continues to remain a focus, with regular annotation updates to the browser and continued curation of our phylogenetic sequence placing tool, hgPhyloPlace, whose tree has now reached over 12M sequences. Our GenArk resource has also grown, offering over 2500 hubs and a system for users to request any absent assemblies. We have expanded our bigBarChart display type and created new ways to visualize data via bigRmsk and dynseq display. Displaying custom annotations is now easier due to our chromAlias system which eliminates the requirement for renaming sequence names to the UCSC standard. Users involved in data generation may also be interested in our new tools and trackDb settings which facilitate the creation and display of their custom annotations.

Impact Factor

Scopus SNIP

Altmetric

14.900

0.000